View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15475_low_6 (Length: 335)
Name: NF15475_low_6
Description: NF15475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15475_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 328
Target Start/End: Original strand, 36127102 - 36127413
Alignment:
| Q |
17 |
gaaaactgatcatcaaaatccaaagaaggtacatgcataaaagttttatcacctcgataatgaacctgctgcatatatagtgaaattaccagcttggagg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36127102 |
gaaaactgatcatcaaaatccaaagaaggtacatgcataaaagttttatcacctcgataatgaacctgctgcatatatagtgaaattaccagcttggagg |
36127201 |
T |
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| Q |
117 |
ccccacttgagaagactcacctgcaccatcttggttttcatcttgttttgctttctcttgaacaacattttcttcaggcacattcacgttattgctttct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36127202 |
ccccacttgagaagactcacctgcaccatcttggttttcatcttgttttgctttctcttgaacaacattttcttcaggcacattcacgttattgctttct |
36127301 |
T |
|
| Q |
217 |
tgcttttgatcagattgaagaacaagtttaccttggttataaagattgctcaatagatgaaagtaaggacaagttcttgaatcaagtgatcttttcctat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36127302 |
tgcttttgatcagattgaagaacaagtttaccttggttataaagattggtcaatagatgaaagtaaggacaagttcttgaatcaagtgatcttttcctat |
36127401 |
T |
|
| Q |
317 |
tagcatcctttg |
328 |
Q |
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|||||||||||| |
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| T |
36127402 |
tagcatcctttg |
36127413 |
T |
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