View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15475_low_9 (Length: 238)
Name: NF15475_low_9
Description: NF15475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15475_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 38413106 - 38413305
Alignment:
| Q |
18 |
gaatcctgatgaagattgccacaaaaacttcaacctcaatgtttccttcttcagcctcttcaacaacgatcttttcttctcaaccattgacattccgttt |
117 |
Q |
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| T |
38413106 |
gaatcctgatgaagattgccacaaaaacttcaacctcaatgtttccttcttcagcctcttcaacaacgatcttttcttctcaaccattgacattccgttt |
38413205 |
T |
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| Q |
118 |
ttctctttgattatttaaatcgattttgcgcgttgtgggttttccttggtgagttgggggactttatattgtattgaggagaaaaggaagcttccccgtt |
217 |
Q |
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| T |
38413206 |
ttctctttgattatttaaatcgattttgcgcgttgt---------------------gggactttatattgtattgaggagaaaaggaagcttccccgtt |
38413284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 38422996 - 38423102
Alignment:
| Q |
24 |
tgatgaagattgccacaaaaacttcaacctcaatgtttccttcttcagcctcttcaacaacgatcttttcttctcaaccattgacattccgtttttctct |
123 |
Q |
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|||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||| || |
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| T |
38422996 |
tgatgatgatttccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaattgacattacgttttttcct |
38423095 |
T |
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| Q |
124 |
ttgatta |
130 |
Q |
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| T |
38423096 |
ttgatta |
38423102 |
T |
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