View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15476_high_10 (Length: 324)
Name: NF15476_high_10
Description: NF15476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15476_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 43065436 - 43065732
Alignment:
| Q |
1 |
catcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttctattcatgcacgtgtttaatcgc |
100 |
Q |
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| T |
43065436 |
catcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttcgattcatgcacatgtttaatcgc |
43065535 |
T |
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| Q |
101 |
aattctgaatcctatcgnnnnnnnatttatggatcgctagttttaaaatagtcgatggttctgtgttctcatatatacttcattcttgcattttaacatt |
200 |
Q |
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| T |
43065536 |
aattctgaatcctatcgtttttttatttatgaatcgctagttttaaaatagttgatggttctgtgttctcatatatacttcattcttgcattttaacatt |
43065635 |
T |
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| Q |
201 |
accatgccattattatattatcgtaatgnnnnnnnnnnagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgtata |
299 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43065636 |
accatgccattattatattatcgtaatg--ttttttttagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgtata |
43065732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 43047473 - 43047402
Alignment:
| Q |
6 |
attcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
77 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43047473 |
attcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
43047402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 43047289 - 43047239
Alignment:
| Q |
168 |
ctcatatatacttcattcttgcattttaacattaccatgccattattatat |
218 |
Q |
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|||||| || |||||||| |||||||||||||||||||||||||||||||| |
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| T |
43047289 |
ctcatacattcttcattcatgcattttaacattaccatgccattattatat |
43047239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 42159107 - 42159055
Alignment:
| Q |
20 |
tattcgtgttgtttactttacatctgcgattgattacattataatgcttttgt |
72 |
Q |
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||||||||| |||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
42159107 |
tattcgtgtactttactttacatctttgatcgattacataataatgcttttgt |
42159055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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