View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15476_high_13 (Length: 301)
Name: NF15476_high_13
Description: NF15476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15476_high_13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 6315070 - 6315347
Alignment:
| Q |
24 |
tcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttggaatatgcctggcaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315070 |
tcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttggaatatgcctggcaa |
6315169 |
T |
|
| Q |
124 |
caatccaacaagctatttagttccctgttgttttgaaatggcaaaaggaaaagcagcaaaatacttagaatttggagattaacacgaggcatatagtaga |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315170 |
caatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatttggagattaacacgaggcatatagtaga |
6315269 |
T |
|
| Q |
224 |
tggaaaaaaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcagatgg |
301 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315270 |
tggaaaagaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcagatgg |
6315347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University