View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15476_high_2 (Length: 359)
Name: NF15476_high_2
Description: NF15476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15476_high_2 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 25 - 359
Target Start/End: Original strand, 13447062 - 13447396
Alignment:
| Q |
25 |
catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagactt |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13447062 |
catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt |
13447161 |
T |
|
| Q |
125 |
accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13447162 |
accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctact |
13447261 |
T |
|
| Q |
225 |
ttgcctccaactttaaacttttctactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttatgaccaaattgag |
324 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
13447262 |
ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataacgaaattgag |
13447361 |
T |
|
| Q |
325 |
caattattttctactcgtttcttttgattgactca |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
13447362 |
caattattttctactcgtttcttttgattgactca |
13447396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 25 - 347
Target Start/End: Original strand, 13419511 - 13419833
Alignment:
| Q |
25 |
catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagactt |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| ||||| |||| |
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| T |
13419511 |
catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactt |
13419610 |
T |
|
| Q |
125 |
accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact |
224 |
Q |
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|| |||| ||| || | | |||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||||||||| || ||| |
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| T |
13419611 |
tgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaact |
13419710 |
T |
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| Q |
225 |
ttgcctccaactttaaacttttctactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttatgaccaaattgag |
324 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||| ||||| |||||||| || | |||| | |||||||| |
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| T |
13419711 |
ttgtctccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgcctgcatttattaaataaattataaacaaattgaa |
13419810 |
T |
|
| Q |
325 |
caattattttctactcgtttctt |
347 |
Q |
| |
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||||||||| |||||| |||||| |
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| T |
13419811 |
caattatttactactcatttctt |
13419833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 13426402 - 13426669
Alignment:
| Q |
25 |
catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagactt |
124 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||| ||||| |||| |
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| T |
13426402 |
catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatactt |
13426501 |
T |
|
| Q |
125 |
accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact |
224 |
Q |
| |
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| || |||| || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| |||||| |
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| T |
13426502 |
agcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctact |
13426601 |
T |
|
| Q |
225 |
ttgcctccaactttaaacttttctactttgcttcccacctctgttactacacccgtaagttcgtgcct |
292 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| ||||| |
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| T |
13426602 |
ttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcct |
13426669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 304
Target Start/End: Original strand, 13413168 - 13413445
Alignment:
| Q |
27 |
tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagacttac |
126 |
Q |
| |
|
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| || ||| ||||| |||| |
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| T |
13413168 |
tcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttgg |
13413267 |
T |
|
| Q |
127 |
cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt |
226 |
Q |
| |
|
|| |||| | |||||| |||||||||||||| || ||| ||||| || || || ||||||||||||| || ||| || || |||||||| |
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| T |
13413268 |
caccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctacttt |
13413367 |
T |
|
| Q |
227 |
gcctccaactttaaacttttctactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattaca |
304 |
Q |
| |
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| |||||||||||||||| || ||||||||||| || |||||||||| ||||| ||| || ||||| ||||||||||| |
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| T |
13413368 |
gtctccaactttaaacttctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatttattaca |
13413445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 273
Target Start/End: Complemental strand, 13389108 - 13388988
Alignment:
| Q |
153 |
cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgcctccaactttaaacttttctactt |
252 |
Q |
| |
|
|||||||| |||| || ||| ||||||||| ||| || |||||||||||||||||||| || || ||||||||| ||||||| || ||||||||||||| |
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| T |
13389108 |
cagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactt |
13389009 |
T |
|
| Q |
253 |
tgcttcccacctctgttacta |
273 |
Q |
| |
|
|||||||||||| ||| |||| |
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| T |
13389008 |
tgcttcccacctttgtcacta |
13388988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 13385288 - 13385167
Alignment:
| Q |
152 |
gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgcctccaactttaaacttttctact |
251 |
Q |
| |
|
||||||||| |||| || ||| ||||||||| ||| || ||||||||||||| ||||| || || ||||||||| ||||||| || |||||||||||| |
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| T |
13385288 |
gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact |
13385189 |
T |
|
| Q |
252 |
ttgcttcccacctctgttacta |
273 |
Q |
| |
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||||||||||||| ||| |||| |
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| T |
13385188 |
ttgcttcccacctttgtcacta |
13385167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 273
Target Start/End: Original strand, 13454143 - 13454263
Alignment:
| Q |
153 |
cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgcctccaactttaaacttttctactt |
252 |
Q |
| |
|
||||||||||||| || || ||||||||| ||| || |||| |||||||||| | ||||||| |||||| || |||||||||| ||||||| |||| |
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| T |
13454143 |
cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt |
13454242 |
T |
|
| Q |
253 |
tgcttcccacctctgttacta |
273 |
Q |
| |
|
|||||||||| ||||| |||| |
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| T |
13454243 |
tgcttcccacttctgtaacta |
13454263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 13454015 - 13454089
Alignment:
| Q |
25 |
catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat |
99 |
Q |
| |
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||||||||||||| ||| |||||||||| ||||||||||||||| | |||||||||||| ||||| ||||||| |
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| T |
13454015 |
catcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat |
13454089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 13393641 - 13393562
Alignment:
| Q |
27 |
tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat |
106 |
Q |
| |
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||||| ||||||| |||||||||| ||| | ||||||||| ||||||||||||||||| ||| | |||||||| ||||| |
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| T |
13393641 |
tcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat |
13393562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 13393477 - 13393403
Alignment:
| Q |
191 |
acgacatgaatcaaccatgtatcccacccctactttgcctccaactttaaacttttctactttgcttcccacctc |
265 |
Q |
| |
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|||||| |||||||| | | ||||||| || |||||| |||||| ||| ||||| |||||||||||||| ||||| |
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| T |
13393477 |
acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacctc |
13393403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 47601353 - 47601427
Alignment:
| Q |
45 |
ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacga |
119 |
Q |
| |
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|||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | |||||| ||||| |
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|
| T |
47601353 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga |
47601427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 47601530 - 47601570
Alignment:
| Q |
222 |
actttgcctccaactttaaacttttctactttgcttcccac |
262 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||||||||| |
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| T |
47601530 |
actttgtctccaactttgaacttttctactttgcttcccac |
47601570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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