View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15476_high_4 (Length: 351)
Name: NF15476_high_4
Description: NF15476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15476_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 11909273 - 11908953
Alignment:
| Q |
1 |
attatgtaaatcttctcaatcgcttggatccaaatctgagcacctcgaggatcgtacctccccttgaaatcttcccagcgctcggaactcatcgttactt |
100 |
Q |
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| T |
11909273 |
attatgtaaatcttctcaatcgcttggatccaaatctgagcacctcgaggatcgtacctccccttgaaatcttcacggtgctcggaactcgtcgttactt |
11909174 |
T |
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| Q |
101 |
ccctgctgatttggatgccatcgctgtcaaggcttcagcgattgcctgatcatttctacctcctaccgtttcttatatgcatcaccgtaaatcagaaaat |
200 |
Q |
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| T |
11909173 |
ccctgctgatttggatgccatcgctggcaaggcttcagcaattgcctgatcatttctgcctcctaccgtttcttatatgcatcaccataaatcagaaaat |
11909074 |
T |
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| Q |
201 |
tactaaggagttaggcatttgtagtgttcacacacatgtagcctaatatgacatgataaaaatataaaacctaggctgtatatggaccgacctgctctag |
300 |
Q |
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| T |
11909073 |
tactaaggagttaggcatttgtagtgttcacacacatgtagcctaatatgacatgataaaaatataaaacctaggctgtatatggaccgacctgctctag |
11908974 |
T |
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| Q |
301 |
tacaagctatataacacccta |
321 |
Q |
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| T |
11908973 |
tacaagctatgtaacacccta |
11908953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11918560 - 11918597
Alignment:
| Q |
1 |
attatgtaaatcttctcaatcgcttggatccaaatctg |
38 |
Q |
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| T |
11918560 |
attatgtaaatcttctcaatcgcttggatccaaatctg |
11918597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 11777425 - 11777347
Alignment:
| Q |
141 |
attgcctgatcatttctacctcctaccgtttcttatatgcatcaccgtaaatcagaaaattactaaggagttaggcattt |
220 |
Q |
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|||||||||||||||||||||| ||| |||||||| ||||||||| ||||||| ||||| | | ||||||||||||| |
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| T |
11777425 |
attgcctgatcatttctacctctaaccttttcttatctgcatcacc-agaatcagacaattatttaagagttaggcattt |
11777347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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