View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15476_high_5 (Length: 344)
Name: NF15476_high_5
Description: NF15476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15476_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 11558870 - 11559109
Alignment:
| Q |
29 |
acaaatatcgttacacttttttgtttgttgagagaacatcgttaaacagaaataataaaatcaaatattttaacaacacttgcaatttttctatttatta |
128 |
Q |
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| T |
11558870 |
acaaatatcgttacacctttttgtttgttgagagaacctcgttaaacagaaataataaaatcaaatattttaacaacacttgcaatttttctatttatta |
11558969 |
T |
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| Q |
129 |
tcaacagagactcgcacgtgatatcgcattggacaacgcaacatacaaaaaacgcaggaggcactgctccagttcggtgttagttatccccatagataac |
228 |
Q |
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| T |
11558970 |
tcaacagagattcgcacgtgatatcgcattagacaacgcaacatacaaaaaacgcaggaggcactgctccagttcggtgttagttat---------tatc |
11559060 |
T |
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| Q |
229 |
gtggaatggataatgtcttcctttatagtattatcttttccacgagatg |
277 |
Q |
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| T |
11559061 |
gtagaatggataatgtcttcctttatagtattatcttttccacgagatg |
11559109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 11568139 - 11568378
Alignment:
| Q |
29 |
acaaatatcgttacacttttttgtttgttgagagaacatcgttaaacagaaataataaaatcaaatattttaacaacacttgcaatttttctatttatta |
128 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11568139 |
acaaatatcgttacacctttttgtttgttgagagaacctcgttaaacagaaataataaaatcaaatattttaacaacacttgcaatttttctatttatta |
11568238 |
T |
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| Q |
129 |
tcaacagagactcgcacgtgatatcgcattggacaacgcaacatacaaaaaacgcaggaggcactgctccagttcggtgttagttatccccatagataac |
228 |
Q |
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| T |
11568239 |
tcaacagagattcgcacgtgatatcgcattagacaacgcaacatacaaaaaacgcaggaggcactgctccagttcggtgttagttat---------tatc |
11568329 |
T |
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| Q |
229 |
gtggaatggataatgtcttcctttatagtattatcttttccacgagatg |
277 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11568330 |
gtagaatggataatgtcttcctttatagtattatcttttccacgagatg |
11568378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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