View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15476_low_1 (Length: 397)

Name: NF15476_low_1
Description: NF15476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15476_low_1
NF15476_low_1
[»] chr4 (4 HSPs)
chr4 (94-246)||(11020060-11020212)
chr4 (1-67)||(11019995-11020061)
chr4 (324-380)||(11021217-11021273)
chr4 (81-175)||(54000182-54000277)
[»] chr3 (1 HSPs)
chr3 (115-179)||(42091791-42091856)
[»] chr2 (3 HSPs)
chr2 (81-174)||(13712885-13712979)
chr2 (109-169)||(9050289-9050350)
chr2 (81-173)||(9931295-9931389)
[»] chr6 (1 HSPs)
chr6 (81-173)||(23577024-23577117)
[»] chr8 (2 HSPs)
chr8 (89-130)||(32166775-32166816)
chr8 (117-180)||(37010347-37010411)
[»] chr7 (1 HSPs)
chr7 (81-173)||(34891381-34891474)
[»] chr5 (1 HSPs)
chr5 (82-169)||(14138565-14138653)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 94 - 246
Target Start/End: Original strand, 11020060 - 11020212
Alignment:
Q  94 attttgaaacgacagagatgcaaatcacatgttaaataaaagagataaaaggtttgatatttttaagatgaaaatgataactaatttaagcnnnnnnnnn 193  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||             
T  11020060 attttgaaacgaaagagatgcaaatcacatgttaaataaaggagataaaaggtttgatatttttaagatgaaaatgataactgatttaagcaaaaacaaa 11020159  T
Q  194 nnntaagatttttctttgatattggtaaatttaccccaattcattaaggggta 246  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11020160 aaataagatttttctttgatattggtaaatttaccccaattcattaaggggta 11020212  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11019995 - 11020061
Alignment:
Q  1 ttactaatatagtagtttgcagaggaagggtcttgagatacaataaatacaaatatattagttgaat 67  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11019995 ttactgatatagtagtttgcagagtaagggtcttgagatacaataaatacaaatatattagttgaat 11020061  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 11021217 - 11021273
Alignment:
Q  324 tccccagacctttaaatcggtaatgatgctaatttaaacatcaaccaccttacttct 380  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11021217 tcccctgacctttaaatcggtaatgatgctaatttaaacatcaactaccttacttct 11021273  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 54000182 - 54000277
Alignment:
Q  81 caaatacaattcgattttgaaacgacagagatgcaaatcacatgttaaataaaagagataaa-aggtttgatatttttaagatgaaaatgataact 175  Q
    ||||||| |||||||||| || | | |||| |  ||||||||| |||||| || |||||||| | ||||||| |||||||||| ||||||||||||    
T  54000182 caaatacgattcgattttaaagccaaagagctaaaaatcacatcttaaatgaaggagataaagaagtttgatgtttttaagataaaaatgataact 54000277  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 42091791 - 42091856
Alignment:
Q  115 aaatcacatgttaaataaaagagat-aaaaggtttgatatttttaagatgaaaatgataactaatt 179  Q
    |||||||||||||||| |||||||| |||| ||||||| ||||| ||||||||||||||| |||||    
T  42091791 aaatcacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatgataattaatt 42091856  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 13712885 - 13712979
Alignment:
Q  81 caaatacaattcgattttgaaacgacagagatgcaaatcacatgttaaataaaagagat-aaaaggtttgatatttttaagatgaaaatgataac 174  Q
    ||||||||||| | ||||| ||| | ||||||| | |||||||||||||| || ||||| |||| |||||| ||||||||||| |||||| ||||    
T  13712885 caaatacaattaggttttggaaccaaagagatgtagatcacatgttaaatgaaggagataaaaaagtttgaaatttttaagataaaaatggtaac 13712979  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 9050289 - 9050350
Alignment:
Q  109 agatgcaaatcacatgttaaataaaagagat-aaaaggtttgatatttttaagatgaaaatg 169  Q
    ||||| |||||| ||||||||| |||||||| |||| | |||||||||||||||||||||||    
T  9050289 agatgtaaatcaaatgttaaatgaaagagatgaaaatgcttgatatttttaagatgaaaatg 9050350  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 9931389 - 9931295
Alignment:
Q  81 caaatacaattcgattttgaaacgacagagatgcaaatcacatgttaaataaaagagataaa--aggtttgatatttttaagatgaaaatgataa 173  Q
    ||||||| ||||||||||| ||| | ||||||| | ||||||||| |||| || ||||||||     |||||| |||||||||||||||||||||    
T  9931389 caaatacgattcgattttggaacaaaagagatgaatatcacatgtaaaatgaatgagataaattttttttgatgtttttaagatgaaaatgataa 9931295  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 23577117 - 23577024
Alignment:
Q  81 caaatacaattcgattttgaaacgacagagatgcaaatcacatgttaaataaaagagataaa-aggtttgatatttttaagatgaaaatgataa 173  Q
    ||||||| ||||||||||| ||  | ||||||| |||| |||| |||||||||||||||||| |  ||| || ||||||| |||||||||||||    
T  23577117 caaatacgattcgattttggaataaaagagatgtaaataacatcttaaataaaagagataaagaaattttatgtttttaaaatgaaaatgataa 23577024  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 32166775 - 32166816
Alignment:
Q  89 attcgattttgaaacgacagagatgcaaatcacatgttaaat 130  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||    
T  32166775 attcgattttggaacgaaagagatgtaaatcacatgttaaat 32166816  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 37010347 - 37010411
Alignment:
Q  117 atcacatgttaaataaaagagataaa-aggtttgatatttttaagatgaaaatgataactaattt 180  Q
    |||||||||||||| ||||| || || | ||||||| ||||| ||||||||||| ||||||||||    
T  37010347 atcacatgttaaatgaaagaaatgaataagtttgatgtttttgagatgaaaatggtaactaattt 37010411  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 34891474 - 34891381
Alignment:
Q  81 caaatacaattcgattttgaaacgacagagatgcaaatcacatgttaaataaaagagataaa-aggtttgatatttttaagatgaaaatgataa 173  Q
    ||||||||||||||||| | || || ||||||  | |||||||||||||| ||  ||||||| | ||||||| || |||| |||||||||||||    
T  34891474 caaatacaattcgatttgggaatgaaagagatctagatcacatgttaaatgaagaagataaagaagtttgatgttcttaatatgaaaatgataa 34891381  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 14138653 - 14138565
Alignment:
Q  82 aaatacaattcgattttgaaacgacagagatgcaaatcacatgttaaataaaagagataa-aaggtttgatatttttaagatgaaaatg 169  Q
    ||||| ||||||||||| |||| | | ||||| | || ||||||| ||| |||||||| | || |||||||||| ||||||||||||||    
T  14138653 aaatataattcgattttcaaacaaaaaagatgaagattacatgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatg 14138565  T

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