View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15477_low_3 (Length: 264)
Name: NF15477_low_3
Description: NF15477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15477_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 68 - 251
Target Start/End: Original strand, 43383963 - 43384150
Alignment:
| Q |
68 |
ataatcattcttcttctcccctcactcttgatttgaggttgggactttaattaattaatttcttcttctttactcttctaatatatattttactacttag |
167 |
Q |
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| T |
43383963 |
ataatcattcttcttctcccctcactcttgatttgaggttgggactttaattaattaatttcttcttctttactcttctaatatatattttactacttaa |
43384062 |
T |
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| Q |
168 |
ttaagttattaggtcatc----atcaccgttgctcatgtatgtttcattttatttgcatcctaattctaattacccctcttatttcat |
251 |
Q |
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| T |
43384063 |
ttaagttattaggtcatcatcgatcaccgttgctcatgtttgtttcattttatttgcaccctaattctaattacctctcttatttcat |
43384150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 25870636 - 25870684
Alignment:
| Q |
71 |
atcattcttcttctcccctcactcttgatttgaggttgggactttaatt |
119 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
25870636 |
atcattcttcttctcccctcactcttcatttgaggttgtgactttaatt |
25870684 |
T |
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