View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15478_high_1 (Length: 792)
Name: NF15478_high_1
Description: NF15478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15478_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 482
Target Start/End: Complemental strand, 9752631 - 9752163
Alignment:
| Q |
13 |
gcaaagggagatagatgaggcactgaagagaagcaaattctgcttagaggaaaggtaaaatatcctattttgcaagaaatagagtaagtggagaacctta |
112 |
Q |
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| T |
9752631 |
gcaaagggagatagatgaggcactgaagagaagcaaattcttcttagaggaaaggtcaa-tatcctattttgcaagaaatagagttagtggagaacctta |
9752533 |
T |
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| Q |
113 |
acaggtttagtgctttagaggtacaagacgtggaggatagtggaaatgatttagggcaacaacacaatgtggaagacacttcctctcaaaacactaaatt |
212 |
Q |
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| T |
9752532 |
acaggtttagtgcgttcgaggtacaagacgtggaggatagtggaaatgatttagggcaacaacacaatgtagaagacacttcctctcaaaacactaaatt |
9752433 |
T |
|
| Q |
213 |
tgtggatgcaacacaaattggagatgtgaataatattgttgatgaggaagaggatgttcaattagagacctcataagatagagtgaggaggaatttagaa |
312 |
Q |
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| T |
9752432 |
tgtggatgcaacacaaattggagatttgaataatattgctggtgaggaagaggaagttcaacaggagacctcggaagataaagtcaggaggaattcagaa |
9752333 |
T |
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| Q |
313 |
tttttgaagaagtcttgggggtaacaatgttgagaatgaagaagctgaagccaggttgctagagaatttagagaaggaaccgattaaagatcaaccagtt |
412 |
Q |
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| T |
9752332 |
tttttgaagaagtcttgggggtaacaatgttgagaatgaagaagctgaagccaggttgctagagaatttcgagaaggaaccgattaaagatcaaccagtt |
9752233 |
T |
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| Q |
413 |
aaagatcaaccacaaagtttcgataagccatcattcaagcgggtgtctcacaaattaaagaacaagtctc |
482 |
Q |
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| T |
9752232 |
aaagatcaaccacaaagtttcgataagccatcattcaagcaggtgtctcacaaattaaagaacaagtctc |
9752163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 521 - 792
Target Start/End: Complemental strand, 9752124 - 9751853
Alignment:
| Q |
521 |
ctttatgctaccatatcaaaggttgtaaaccccaatcctttcagatgaagtgcatgtactagaacttgataggcttagctaatcaccctaaaagattggc |
620 |
Q |
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| T |
9752124 |
ctttatgctaccatatcaaaggttgtaaaccccaatcctttcagatgaagtgcatgtactagaacttgataggcttagctaatcaccctaaaagattggc |
9752025 |
T |
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| Q |
621 |
actcaagaatcttattctaaatgataaacctggtattgtcctcattgctgaaccttagatgaaaatagaagatttaacaagaaacatgtttgctagattg |
720 |
Q |
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| T |
9752024 |
actcaagaatcttattctaaatgataaacctggtattgtcctcattgctgaaccttagatgaaaatagaagatttaacaagaaacatgtttgctagattg |
9751925 |
T |
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| Q |
721 |
aacttcaaattgtttttaagaagattttgtttaactcaccttaaccctaagataatacttattgatgaccaa |
792 |
Q |
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| T |
9751924 |
aacttcaaattgtttttaagaagattttgtttaactcaccttaaccctaagataatacttattgatgaccaa |
9751853 |
T |
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