View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15478_low_3 (Length: 321)
Name: NF15478_low_3
Description: NF15478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15478_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 21077790 - 21078070
Alignment:
| Q |
1 |
gatttgattgaacaaatggtgggaatgggttgggtggtgaagaacattttattgtcaaagcaagaacaggcaagatacagttttgtgtatgattaattaa |
100 |
Q |
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| T |
21077790 |
gatttgattgaacaaatggtgggaatgggttgggtggtgaagaacattttattgtcaaagcaagaacaggcaagatacagttttgtgtatgattaattaa |
21077889 |
T |
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| Q |
101 |
agatggttttcaaaattttgttggctccttaatatcatgggagtgtttagggtttactattcattttaagattaaccttaaggg--cattgggttaactt |
198 |
Q |
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| T |
21077890 |
agatggtttacaaaattttgttggctccttaatattatgggagagtttagggtttactattca-tttaagattaaccttaagggcacattgggttaactt |
21077988 |
T |
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| Q |
199 |
tagtggaaaaagtaagagatcctaattgtatnnnnnnnnggagtaaatgattttaatgtatttttacatactcaaaccgtta |
280 |
Q |
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| T |
21077989 |
tagtggaaaaagtaagagatcctaattgtataaaaaaaaggagtaaatgattttaatgtatttttacatattcaaaccgtta |
21078070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 21078199 - 21078259
Alignment:
| Q |
261 |
tttacatactcaaaccgttaaactttacttttctctctgaatgacattctccatccatgtt |
321 |
Q |
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| T |
21078199 |
tttacatattcaaaccgttaaactttacttttctctctaaatgacattctccatccatgtt |
21078259 |
T |
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