View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15479_high_2 (Length: 367)
Name: NF15479_high_2
Description: NF15479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15479_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 32 - 367
Target Start/End: Original strand, 2793821 - 2794156
Alignment:
| Q |
32 |
actcaatgccattgatgacggtgtttacgagccaaagacgaaggaaactcgtgctgcttatgaggcgatgttgagtgtaatccagcagcggtttggtggt |
131 |
Q |
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| T |
2793821 |
actcaatgccgttgataacggtgtttacgagccaaagacgaaggaaactcgtgctgcttatgaggcgatgttgagtgtaatccagcagcggtttggtggt |
2793920 |
T |
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| Q |
132 |
cagccgcttgggattatcagaggcgctgctgacgagattctttccattctgaaaaacgactctattggtgacaagaagattaacattgagaaactgctta |
231 |
Q |
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| T |
2793921 |
cagccgcttgggattatcagaggtgctgctgatgagattctttccattctgaaaaacgactctgttggtgacaagaagattaacattgagaaactgctta |
2794020 |
T |
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| Q |
232 |
accctatcactgatactgtgtttaatcgccttgtttcgattggaaaggttataactgattttctggagtttgaggatgttgagggtggttttgattcttt |
331 |
Q |
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| T |
2794021 |
accctatcactgatactgtgtttaatcaccttgtttcgattggaaagcttataactgattttctggagtttgaggatgtggagggtggttttgattcttt |
2794120 |
T |
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| Q |
332 |
tgacggtgttgcagtggaatttgaagagaatgaaga |
367 |
Q |
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| T |
2794121 |
tgacggtgttgcagtggaatttgaagagaatgaaga |
2794156 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 29261256 - 29261349
Alignment:
| Q |
44 |
tgatgacggtgtttacgagccaaagacgaaggaaactcgtgctgcttatgaggcgatgttgagtgtaatccagcagcggtttggtggtcagccg |
137 |
Q |
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| T |
29261256 |
tgatgacggtgtttatcagccgaagacgaaggagacaagagcagcttatgaagctatgttgagtgtgattcagcaacagcttggtggtcagccg |
29261349 |
T |
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