View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15479_high_6 (Length: 357)
Name: NF15479_high_6
Description: NF15479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15479_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 53491609 - 53491937
Alignment:
| Q |
1 |
tcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcacgtatactctagacattaaaagcttacag |
100 |
Q |
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| T |
53491609 |
tcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagacattaaaagcttacag |
53491708 |
T |
|
| Q |
101 |
ttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttttgtctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491709 |
ttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttttgtctcaa |
53491808 |
T |
|
| Q |
201 |
acaatgggtagttgcaccttgtatcccgcaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcattacagatgc |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491809 |
acaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcattacagatgc |
53491908 |
T |
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| Q |
301 |
caaggatgcatatattaaggcagattcct |
329 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
53491909 |
caaagatgcatatattaaggcagattcct |
53491937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 267
Target Start/End: Original strand, 53499204 - 53499468
Alignment:
| Q |
3 |
gctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcacgtatactctagacattaaaagcttacagtt |
102 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||| |
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| T |
53499204 |
gctccaatctgttaaataagcggactaaaatataaatgcaatcgtacataaaaggagttcttccattcatgtatactctagacattaaaagcttacagtt |
53499303 |
T |
|
| Q |
103 |
cgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttttgtctcaaac |
202 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
53499304 |
cgagtagaatagccccatgagttctgccaaaccattgctttctctcccttcttatcttcaaattttacctcgaacttttcagcaaacttttgtcccaagc |
53499403 |
T |
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| Q |
203 |
aatgggtagttgcaccttgtatcccgcaaccagtgtttggaataaatgcctaggaaaattgaaca |
267 |
Q |
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| T |
53499404 |
aatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaactgaaca |
53499468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 81 - 267
Target Start/End: Original strand, 16070390 - 16070576
Alignment:
| Q |
81 |
tagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttt |
180 |
Q |
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|||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||||| |
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| T |
16070390 |
tagacattgaaagcttacagttcgagtagaaaacccccatgagttctgccaaaccattgttttctctaccttcttatcttcaaagtttatctcaaacttc |
16070489 |
T |
|
| Q |
181 |
tcagcaaacttttgtctcaaacaatgggtagttgcaccttgtatcccgcaaccagtgtttggaataaatgcctaggaaaattgaaca |
267 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||| | |||| ||||||||||||| |||||| ||||||||||| |
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| T |
16070490 |
tcagcaaacttttgtcccaaacaatgggtagctgcaccttgtatcccacgaccaatgtttggaataaaagcctagaaaaattgaaca |
16070576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 53499888 - 53499936
Alignment:
| Q |
281 |
caaatactcattacagatgccaaggatgcatatattaaggcagattcct |
329 |
Q |
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|||| |||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
53499888 |
caaagactcattacagatgccaaaaatgcatatagtaaggcagattcct |
53499936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 90 - 258
Target Start/End: Complemental strand, 45355076 - 45354908
Alignment:
| Q |
90 |
aaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaac |
189 |
Q |
| |
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||||||||||||||||||| |||| |||| || |||||||| ||||||||||||||||||||| || |||| | |||| ||| ||| ||| |||||| |
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| T |
45355076 |
aaagcttacagttcgagtactataggcccacgagttctgccagaccattgctttctctcccttctcattttcatagtttatctcaaacattttagcaaaa |
45354977 |
T |
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| Q |
190 |
ttttgtctcaaacaatgggtagttgcaccttgtatcccgcaaccagtgtttggaataaatgcctaggaa |
258 |
Q |
| |
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||||||| ||||||||| | ||||||||||||||| || | |||||||||||||||||||||||||||| |
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| T |
45354976 |
ttttgtcccaaacaatgagaagttgcaccttgtataccacgaccagtgtttggaataaatgcctaggaa |
45354908 |
T |
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