View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15479_high_8 (Length: 329)
Name: NF15479_high_8
Description: NF15479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15479_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 6315048 - 6315347
Alignment:
| Q |
1 |
tgtgcagagtttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagc |
100 |
Q |
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| T |
6315048 |
tgtgcagaatttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagc |
6315147 |
T |
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| Q |
101 |
agctttggaatatgcctggcaacaatccaacaagctatttagttccctgttgttttggaatggcaaaagaaaaagcagcaaaacacttagaatttggaga |
200 |
Q |
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| T |
6315148 |
agctttggaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatttggaga |
6315247 |
T |
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| Q |
201 |
ttaacacgaggcatatagtagatggaaaaaaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcagatgg |
300 |
Q |
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| T |
6315248 |
ttaacacgaggcatatagtagatggaaaagaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcagatgg |
6315347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 6318189 - 6318236
Alignment:
| Q |
10 |
tttatttttactgtcatcaacaactgcacaacaatgattatgaatggt |
57 |
Q |
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| T |
6318189 |
tttaattttactgtcatcaacagctgcacaacaaggattatgaatggt |
6318236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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