View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15479_high_9 (Length: 319)
Name: NF15479_high_9
Description: NF15479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15479_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 5853490 - 5853658
Alignment:
| Q |
1 |
gtgttccagtgcaaagcatattcaaaacaaggtaggtgtataaaccttgtgcccttcaaaagtttttattgggtggttatcgccaatcttgcaaacatgt |
100 |
Q |
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| T |
5853490 |
gtgttccagtgcaaagcgtattcaaaacaaggtaggtgtataaacctggtgcccttcaaaagtttttattgggtggttatcgccaatcttgcaaacatgt |
5853589 |
T |
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| Q |
101 |
atcatggtgtcagtggagcttgatgcaaacgatacattgttgcgccaatcaacgtcaagtgttggacct |
169 |
Q |
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| T |
5853590 |
atcatggtgtcagtggagcttgatgcaaacgatacattgttacgccaatcaacgtcaagtgttggacct |
5853658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 5869495 - 5869644
Alignment:
| Q |
20 |
attcaaaacaaggtaggtgtataaaccttgtgcccttcaaaagtttttattgggtggttatcgccaatcttgcaaacatgtatcatggtgtcagtggagc |
119 |
Q |
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| T |
5869495 |
attcaaaacaagttaggtgtataaacctggtgcccggcaaaagtttttactgggtggttttcgccaatcttgcaaacatgtatcatggtgtcattggagc |
5869594 |
T |
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| Q |
120 |
ttgatgcaaacgatacattgttgcgccaatcaacgtcaagtgttggacct |
169 |
Q |
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| T |
5869595 |
ttgatgcaaatgacacattattgcgccaatcaacgtcgagtgttgaacct |
5869644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 203 - 311
Target Start/End: Original strand, 5853691 - 5853800
Alignment:
| Q |
203 |
tagaagttcataaacatgtttt-tctcaccaagagttctcttttagagagaatattattgtnnnnnnnttacctttatgaaaagcaaattgttgtttcca |
301 |
Q |
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| T |
5853691 |
tagaagttcataaacatgttttttctcaccaagagttctcttttagagagaatattattgtaaaaaaattacctttatgaaaagcaaattgttgtttcca |
5853790 |
T |
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| Q |
302 |
tttctctgct |
311 |
Q |
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| T |
5853791 |
tttctctgct |
5853800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 169
Target Start/End: Complemental strand, 39620239 - 39620127
Alignment:
| Q |
57 |
caaaagtttttattgggtggttatcgccaatcttgcaaacatgtatcatggtgtcagtggagcttgatgcaaacgatacattgttgcgccaatcaacgtc |
156 |
Q |
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| T |
39620239 |
caaaagtttgtgtagggtggttttcaccaatcttgcagacatatatcatattgtctgtagaacttgaggcgaaagacgtattggtgcgccagtcaacatc |
39620140 |
T |
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| Q |
157 |
aagtgttggacct |
169 |
Q |
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| T |
39620139 |
aagtgttggacct |
39620127 |
T |
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