View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1547_high_14 (Length: 387)

Name: NF1547_high_14
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1547_high_14
NF1547_high_14
[»] chr5 (3 HSPs)
chr5 (45-373)||(13656815-13657143)
chr5 (45-373)||(13646489-13646817)
chr5 (70-308)||(13651595-13651833)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 45 - 373
Target Start/End: Original strand, 13656815 - 13657143
Alignment:
Q  45 aatgatgatattcaagctcttttagaatgttaccctgagcttcaattcaagaccatctctgattgtcacagtgaggagaaacatcctggatttggagaaa 144  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13656815 aatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagaccatctctgattttcacagtgaggagaaacatcctggatttggagaaa 13656914  T
Q  145 aggtaggtgatgtaattttgtcactgagattgtatggtaagtctattttgagagatattattgtgtctgagaaaataagttgcattattttggatggaat 244  Q
    |||||||||||||||||||||||||||| |||||||||||| || | |||| |||||| ||||| || ||||||||||||||||||||||||||||||||    
T  13656915 aggtaggtgatgtaattttgtcactgagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattattttggatggaat 13657014  T
Q  245 atttggtgatcttgctactgatttggctcatgagtttgggatacaattgatacattttcgtactattagtgcttgttgcttttgggcttatttatctgtt 344  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13657015 atttggtgatcttgctactgatttggctgctgagtttgggatacaattgattcattttcgtactattagtgcttgttgcttttgggcttatttatctgtt 13657114  T
Q  345 ccaaagctcttggagtgcaatgaacttcc 373  Q
    ||||||||||||||||||||||| |||||    
T  13657115 ccaaagctcttggagtgcaatgagcttcc 13657143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 45 - 373
Target Start/End: Original strand, 13646489 - 13646817
Alignment:
Q  45 aatgatgatattcaagctcttttagaatgttaccctgagcttcaattcaagaccatctctgattgtcacagtgaggagaaacatcctggatttggagaaa 144  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||| ||||| |||||||||||||||||||    
T  13646489 aatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagactatctctgattttcatagtgaagagaagcatcctggatttggagaaa 13646588  T
Q  145 aggtaggtgatgtaattttgtcactgagattgtatggtaagtctattttgagagatattattgtgtctgagaaaataagttgcattattttggatggaat 244  Q
     | ||||||||||||||  ||||||||| |||||||||||| || | |||| |||||| ||||| || ||||||||||||||||||||||||||||||||    
T  13646589 ggataggtgatgtaattacgtcactgagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattattttggatggaat 13646688  T
Q  245 atttggtgatcttgctactgatttggctcatgagtttgggatacaattgatacattttcgtactattagtgcttgttgcttttgggcttatttatctgtt 344  Q
    ||||||||||||||||||||||||||||  ||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| | ||||    
T  13646689 atttggtgatcttgctactgatttggctgctgagtttggaatacaattgattcattttcgtactattagttcttgttgcttttgggcttatttctgtgtt 13646788  T
Q  345 ccaaagctcttggagtgcaatgaacttcc 373  Q
    |||||||||||||||||||||||||||||    
T  13646789 ccaaagctcttggagtgcaatgaacttcc 13646817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 70 - 308
Target Start/End: Original strand, 13651595 - 13651833
Alignment:
Q  70 aatgttaccctgagcttcaattcaagaccatctctgattgtcacagtgaggagaaacatcctggatttggagaaaaggtaggtgatgtaattttgtcact 169  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| | | ||||||| ||||||||||||||||||||  | |  ||||||||||  ||  |    
T  13651595 aatgttaccctaagcttcaattcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccat 13651694  T
Q  170 gagattgtatggtaagtctattttgagagatattattgtgtctgagaaaataagttgcattattttggatggaatatttggtgatcttgctactgatttg 269  Q
     |   ||||||||||| ||  ||||||||| |||||||| |||||||||||||||||||||||||| ||||||   |||||||| |||||||||||||||    
T  13651695 aaatatgtatggtaagccttctttgagagacattattgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgctactgatttg 13651794  T
Q  270 gctcatgagtttgggatacaattgatacattttcgtact 308  Q
    |||  ||| ||||||||||| ||||||||||||||||||    
T  13651795 gctgctgaatttgggatacagttgatacattttcgtact 13651833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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