View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1547_high_26 (Length: 287)

Name: NF1547_high_26
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1547_high_26
NF1547_high_26
[»] chr3 (2 HSPs)
chr3 (18-271)||(52643587-52643840)
chr3 (147-236)||(43337261-43337350)
[»] chr7 (4 HSPs)
chr7 (18-259)||(31285208-31285449)
chr7 (18-247)||(36618447-36618676)
chr7 (173-271)||(47218586-47218684)
chr7 (152-247)||(16856989-16857084)
[»] chr6 (2 HSPs)
chr6 (148-237)||(4085780-4085869)
chr6 (201-233)||(587829-587861)
[»] chr5 (2 HSPs)
chr5 (150-247)||(22822638-22822735)
chr5 (147-236)||(10018647-10018735)
[»] chr1 (2 HSPs)
chr1 (150-247)||(23461077-23461174)
chr1 (148-237)||(3575381-3575470)
[»] chr8 (1 HSPs)
chr8 (147-236)||(42006216-42006305)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 52643587 - 52643840
Alignment:
Q  18 aataacaatgtgattgaaaatattcattggcagcctcctagttgaggatggattcggctaaatacggatggagctgctaagggagaagatattgcaagat 117  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  52643587 aataataaggtgattgaaaatattcattggcagcctcctagtttaggatgaattcggctaaatacggatggagctgctaagggagaagatattgcaggat 52643686  T
Q  118 gtggaggagttctaaggggagatagcggtgagtggatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtt 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52643687 gtggaggagttctgaggggagatagcggtgagtggatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttgggatgtgtt 52643786  T
Q  218 tgaaggttttaagttggctctatctcatgggtttttgagggtggagcttcatgt 271  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52643787 tgaaggtttgaagttggctctatctcatgggtttttgagggtggagcttcatgt 52643840  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 43337261 - 43337350
Alignment:
Q  147 gagtggatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtttgaaggttttaagttggct 236  Q
    |||||||||||||  |||||||| || || ||||| ||||||||||||||||| ||||||||||| |||||||||||||| || ||||||    
T  43337261 gagtggatttgtgatttttcaaaggggttgggagcttgtagtgcatatgttgcagagctttggggggtgtttgaaggtttgaaattggct 43337350  T

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Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 31285449 - 31285208
Alignment:
Q  18 aataacaatgtgattgaaaatattcattggcagcctcctagttgaggatggattcggctaaatacggatggagctgctaagggagaagatattgcaagat 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31285449 aataataatgtgattgaaaatattcattggcagcctcctagtttaggatgaattcggctaaatacggatggagctgctaagggagaagatattgcaggat 31285350  T
Q  118 gtggaggagttctaaggggagatagcggtgagtggatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtt 217  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31285349 gtggaggagttctgaggggagatagcggtgagtggatttttggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtatgtt 31285250  T
Q  218 tgaaggttttaagttggctctatctcatgggtttttgagggt 259  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  31285249 tgaaggtttgaagttggctctatctcatgggtttttgagggt 31285208  T

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Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 36618447 - 36618676
Alignment:
Q  18 aataacaatgtgattgaaaatattcattggcagcctcctagttgaggatggattcggctaaatacggatggagctgctaagggagaagatattgcaagat 117  Q
    ||||| || |||||||||||||| ||||||||||| ||||||| |||||||||| ||||||||| |||||||||  |||||||||||| ||||||| |||    
T  36618447 aataataaggtgattgaaaatatccattggcagccacctagtttaggatggattaggctaaatatggatggagcatctaagggagaaggtattgcaggat 36618546  T
Q  118 gtggaggagttctaaggggagatagcggtgagtggatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtt 217  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  36618547 gtggaggagttctaaggggagatagtggtgagtgtatttgtggcttttcaaaaggtttaggagcatatagtgcatatgttgcggagctttggggtgtgtt 36618646  T
Q  218 tgaaggttttaagttggctctatctcatgg 247  Q
    ||||| ||| ||||| ||||||||||||||    
T  36618647 tgaagatttgaagttcgctctatctcatgg 36618676  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 47218586 - 47218684
Alignment:
Q  173 tttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtttgaaggttttaagttggctctatctcatgggtttttgagggtggagcttcatgt 271  Q
    ||||||||| |||||||||||||||||| ||||||||   |||||||||||||| ||||||||||| ||||||||| |||| ||||||||| |||||||    
T  47218586 tttaggagcctgtagtgcatatgttgcgaagctttggaaggtgtttgaaggtttgaagttggctctttctcatggggttttaagggtggagtttcatgt 47218684  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 16857084 - 16856989
Alignment:
Q  152 gatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtttgaaggttttaagttggctctatctcatgg 247  Q
    ||||||| | ||||||||||| || ||  | |||||||| ||||| || ||| | ||||||| |||||||||||| ||||||||||  ||||||||    
T  16857084 gatttgtagtttttcaaaagggttgggctcttgtagtgcttatgtggcagagttgtggggtgcgtttgaaggtttgaagttggctcgttctcatgg 16856989  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 4085869 - 4085780
Alignment:
Q  148 agtggatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtttgaaggttttaagttggctc 237  Q
    ||||||||||||| ||||||||| | ||||||| ||||||||| ||||| || ||||| |||||||| || ||||| || ||| ||||||    
T  4085869 agtggatttgtggattttcaaaatggttaggagtgtgtagtgcgtatgtggctgagctatggggtgttttggaaggcttgaagatggctc 4085780  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 587829 - 587861
Alignment:
Q  201 gagctttggggtgtgtttgaaggttttaagttg 233  Q
    |||||||||||||||||||||||||| ||||||    
T  587829 gagctttggggtgtgtttgaaggtttgaagttg 587861  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 22822735 - 22822638
Alignment:
Q  150 tggatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtttgaaggttttaagttggctctatctcatgg 247  Q
    ||||||||||| ||||||||||| || ||  | |||||||| ||||| || ||| | ||||||||||||||||| || ||||||||||  ||||||||    
T  22822735 tggatttgtggtttttcaaaagggttgggctcttgtagtgcttatgtggcagagttgtggggtgtgtttgaaggcttgaagttggctcgttctcatgg 22822638  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 10018647 - 10018735
Alignment:
Q  147 gagtggatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtttgaaggttttaagttggct 236  Q
    |||||||| ||||| ||||| || || || ||||| |||||| |||||||||| ||||||||||| ||||| ||| |||| |||||||||    
T  10018647 gagtggatatgtggtttttcgaaggggttgggagcttgtagtacatatgttgccgagctttgggg-gtgttcgaaagtttgaagttggct 10018735  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 23461174 - 23461077
Alignment:
Q  150 tggatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtttgaaggttttaagttggctctatctcatgg 247  Q
    ||||||||||| ||||||||||| || ||  | |||||||| ||||| || ||| | ||||||||||||||||| || ||||||||||  ||||||||    
T  23461174 tggatttgtggtttttcaaaagggttgggctcttgtagtgcttatgtggcagagttgtggggtgtgtttgaaggcttgaagttggctcgttctcatgg 23461077  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 3575470 - 3575381
Alignment:
Q  148 agtggatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtttgaaggttttaagttggctc 237  Q
    ||||||||||||||||||||||| | ||| ||| ||||||||| ||||| || ||  | ||||||||||| ||||| || ||| ||||||    
T  3575470 agtggatttgtggcttttcaaaatggttaagagtgtgtagtgcgtatgtggctgaagtatggggtgtgttagaaggcttgaagatggctc 3575381  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 42006305 - 42006216
Alignment:
Q  147 gagtggatttgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtgtgtttgaaggttttaagttggct 236  Q
    |||||||| ||||| ||||| || || || ||||  |||||||||||||||||  |||||| ||| ||||  |||||||| |||||||||    
T  42006305 gagtggatatgtggtttttcgaaggggttgggagtttgtagtgcatatgttgcatagctttagggggtgtacgaaggtttgaagttggct 42006216  T

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