View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_high_29 (Length: 269)
Name: NF1547_high_29
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 23121142 - 23121375
Alignment:
| Q |
19 |
gaacacatcaattaaaggaagcacatgacctgacgatgaatattatttctacacacaataaattagcataacaatcccaattattttactttcaaaaatg |
118 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23121142 |
gaacacatcaattaaagggagcacatgacatgacgatgaatattatttctacacataaaaaattagcataacaatcccaattattttactttcaaaaatg |
23121241 |
T |
|
| Q |
119 |
tgataaaatttagttttgcctaatgactacaattattttcctcacgaatggttgacatcccctctcttttttccccatagaaaaagcgctaatcatagag |
218 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
23121242 |
tgataaaatttggttttgcctaatgactacaattattttcctcacgaatggttaacatcccctctctttttttcccatagaaaaagcactaatcatagag |
23121341 |
T |
|
| Q |
219 |
aaaccagttctgttacactctgacattaacttag |
252 |
Q |
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||||||||| ||||||||||| |||||||||||| |
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| T |
23121342 |
aaaccagttgtgttacactcttacattaacttag |
23121375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 22631385 - 22631150
Alignment:
| Q |
19 |
gaacacatcaattaaaggaagcacatgacctgacgatgaatattatttctacacacaataaattagcataacaatcccaattattt-tactt-tcaaaaa |
116 |
Q |
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|||||||||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| | |
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| T |
22631385 |
gaacacatcaattaaagggagcacatgacatgacaccgaatattatttctacacacaaaaaattagcataacaatcccaattatttctacacatcaatat |
22631286 |
T |
|
| Q |
117 |
tgtgataaaatttagttttgcctaatgactacaattattttcctcacgaatggttgacatcccctctcttttttccccatagaaaaagcgctaatcatag |
216 |
Q |
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| T |
22631285 |
tgtgataaaatttgattttgcctaatgactacaattattttcctcatgaatggttgacatcccctctctttttttcccatagaaaaagcgctaatcatag |
22631186 |
T |
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| Q |
217 |
agaaaccagttctgttacactctgacattaacttag |
252 |
Q |
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||||||||||| | |||||||||||||||||||||| |
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| T |
22631185 |
agaaaccagttattttacactctgacattaacttag |
22631150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 55 - 250
Target Start/End: Complemental strand, 27366555 - 27366362
Alignment:
| Q |
55 |
tgaatattatttctacacacaataaattagcataacaatcccaattattttactttcaaaaatgtgataaaatttagttttgcctaatgactacaattat |
154 |
Q |
| |
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||||||||||||| ||| ||| || || ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||| |||| |||| |
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| T |
27366555 |
tgaatattatttc--cacgcaaaaatttggcataacaatccctattattttactttgtaaaatgtgataaaatttggttttgcgtaatgtctaccattac |
27366458 |
T |
|
| Q |
155 |
tttcctcacgaatggttgacatcccctctcttttttccccatagaaaaagcgctaatcatagagaaaccagttctgttacactctgacattaactt |
250 |
Q |
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|||||||| |||||||||||||||||| |||||||| | | || |||| ||||||||||||||||||| || |||||||| |||||||||||| |
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| T |
27366457 |
tttcctcatgaatggttgacatcccctgtctttttttctctaagtaaaaatgctaatcatagagaaaccaattttgttacaccttgacattaactt |
27366362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 55 - 250
Target Start/End: Complemental strand, 27456902 - 27456709
Alignment:
| Q |
55 |
tgaatattatttctacacacaataaattagcataacaatcccaattattttactttcaaaaatgtgataaaatttagttttgcctaatgactacaattat |
154 |
Q |
| |
|
||||||||||||| ||| ||| || || ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||| |||| |||| |
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| T |
27456902 |
tgaatattatttc--cacgcaaaaatttggcataacaatccctattattttactttgtaaaatgtgataaaatttggttttgcgtaatgtctaccattac |
27456805 |
T |
|
| Q |
155 |
tttcctcacgaatggttgacatcccctctcttttttccccatagaaaaagcgctaatcatagagaaaccagttctgttacactctgacattaactt |
250 |
Q |
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|||||||| |||||||||||||||||| |||||||| | | || |||| ||||||||||||||||||| || |||||||| |||||||||||| |
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| T |
27456804 |
tttcctcatgaatggttgacatcccctgtctttttttctctaagtaaaaatgctaatcatagagaaaccaattttgttacaccttgacattaactt |
27456709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 190
Target Start/End: Original strand, 45074489 - 45074622
Alignment:
| Q |
55 |
tgaatattatttctacacacaataaattagcataacaatcccaattattttactttcaaaaatgtgataaaatttagttttgcctaatgactacaattat |
154 |
Q |
| |
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||||||||||||| ||| ||| || || ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||| |
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| T |
45074489 |
tgaatattatttc--cacgcaaaaatttggcataacaatccctattattttactttgtaaaatgtgataaaatttggttttgcgtaatgcttacaattac |
45074586 |
T |
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| Q |
155 |
tttcctcacgaatggttgacatcccctctctttttt |
190 |
Q |
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|||||||| |||||||||||||||||| | |||||| |
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| T |
45074587 |
tttcctcatgaatggttgacatcccctttttttttt |
45074622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 51094022 - 51093886
Alignment:
| Q |
54 |
atgaatattatttctacacacaataaattagcataacaatcccaattattttactttcaaaaatgtgataaaatttagttttgcctaatgactacaatta |
153 |
Q |
| |
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||||||||| ||| | |||||| | ||| ||||| |||| |||||||||| | ||| ||||||||||||| |||| || | |||||||||||| | | |
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| T |
51094022 |
atgaatattttttatttacacaacatattggcatatcaattccaattatttaattttgaaaaatgtgataatatttggtgtatcctaatgactaccgtaa |
51093923 |
T |
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| Q |
154 |
ttttcctcacgaatggttgacatcccctctctttttt |
190 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
51093922 |
ctttcctcatgaatggttgacatcccctctctttttt |
51093886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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