View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_high_3 (Length: 537)
Name: NF1547_high_3
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 354 - 434
Target Start/End: Original strand, 42438752 - 42438833
Alignment:
| Q |
354 |
cgttcaagaataccttgatta-tacatgctttcccgtaagctcgaagacgccgtcaatgccgccgttagagccaaaacctcc |
434 |
Q |
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| T |
42438752 |
cgttcaagaatatcttgataaatacatgctttcccgtaaactcgaagacgccgtcaatgccgccgttagagccaaaacctcc |
42438833 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 42567249 - 42567217
Alignment:
| Q |
450 |
ttctcaatgcagagtttattatagttttgagtt |
482 |
Q |
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| T |
42567249 |
ttctcaatgcatagtttattatagttttgagtt |
42567217 |
T |
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