View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1547_high_32 (Length: 262)

Name: NF1547_high_32
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1547_high_32
NF1547_high_32
[»] chr4 (1 HSPs)
chr4 (18-246)||(15835365-15835593)
[»] chr8 (3 HSPs)
chr8 (162-225)||(39785586-39785649)
chr8 (169-243)||(34018250-34018324)
chr8 (169-243)||(6863039-6863113)
[»] chr5 (2 HSPs)
chr5 (167-225)||(33155632-33155690)
chr5 (155-221)||(3769908-3769974)
[»] chr3 (1 HSPs)
chr3 (155-243)||(40386282-40386370)
[»] chr1 (2 HSPs)
chr1 (175-243)||(7890384-7890452)
chr1 (187-223)||(7817340-7817376)
[»] chr7 (1 HSPs)
chr7 (155-243)||(23940522-23940610)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 15835593 - 15835365
Alignment:
Q  18 gcgtccgtgcttcatagctgaaaataatactaatactggtgttgaactattagtatggtttggagaagaaattacttttaactcggatttgtgtgatgtt 117  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15835593 gcgtctgtgcttcatagttgaaaataatactaatactggtgttgaactattagtatggtttggagaagaaattacttttaactgggatttgtgtgatgtt 15835494  T
Q  118 taactattgaaaggttatttagaaactttatataattattctatgatgaacaagtgtgacaagtcttgcatcatgcagaagctaggtttcacaattggat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  15835493 taactattgaaaggttatttagaaactttatataattattctatgatgaacaagtgtgacaagtcttgtatcatgcagaagctaggtttcgcaattggat 15835394  T
Q  218 caataaatttcacgtttaaatgaaataaa 246  Q
    |||||||||||||| |||| |||||||||    
T  15835393 caataaatttcacgattaagtgaaataaa 15835365  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 39785586 - 39785649
Alignment:
Q  162 gatgaacaagtgtgacaagtcttgcatcatgcagaagctaggtttcacaattggatcaataaat 225  Q
    |||| ||||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  39785586 gatgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaat 39785649  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 34018324 - 34018250
Alignment:
Q  169 aagtgtgacaagtcttgcatcatgcagaagctaggtttcacaattggatcaataaatttcacgtttaaatgaaat 243  Q
    ||||| |||||||||||||||||||| ||||||| ||| || |||||||||||||||| |||  |||||| ||||    
T  34018324 aagtgagacaagtcttgcatcatgcacaagctagtttttaccattggatcaataaattccaccattaaattaaat 34018250  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 6863039 - 6863113
Alignment:
Q  169 aagtgtgacaagtcttgcatcatgcagaagctaggtttcacaattggatcaataaatttcacgtttaaatgaaat 243  Q
    ||||| ||||||||||||||||| || ||||||| || ||| ||||||||||||||| ||||  |||||| ||||    
T  6863039 aagtgagacaagtcttgcatcatacacaagctagtttccaccattggatcaataaatctcaccattaaattaaat 6863113  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 33155690 - 33155632
Alignment:
Q  167 acaagtgtgacaagtcttgcatcatgcagaagctaggtttcacaattggatcaataaat 225  Q
    ||||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  33155690 acaagtgagacaagtcttgcatcatgcacaagctagttttcaccattggatcaataaat 33155632  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 3769974 - 3769908
Alignment:
Q  155 attctatgatgaacaagtgtgacaagtcttgcatcatgcagaagctaggtttcacaattggatcaat 221  Q
    |||||||| || |||||||  ||||||||||||||||||| ||| ||| |||||| |||||| ||||    
T  3769974 attctatggtgcacaagtgaaacaagtcttgcatcatgcacaagttagttttcaccattggaccaat 3769908  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 40386282 - 40386370
Alignment:
Q  155 attctatgatgaacaagtgtgacaagtcttgcatcatgcagaagctaggtttcacaattggatcaataaatttcacgtttaaatgaaat 243  Q
    |||||||| || |||||||| |||||| |||||||||||| |||| || || ||| ||||||||||||||| ||||  |||||| ||||    
T  40386282 attctatggtgcacaagtgtaacaagttttgcatcatgcacaagccagtttccaccattggatcaataaatctcactattaaattaaat 40386370  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 7890384 - 7890452
Alignment:
Q  175 gacaagtcttgcatcatgcagaagctaggtttcacaattggatcaataaatttcacgtttaaatgaaat 243  Q
    ||||||| |||||||||||| ||  ||| |||||| ||||||||||||||||||||  |||||| ||||    
T  7890384 gacaagtattgcatcatgcacaaagtagttttcactattggatcaataaatttcaccattaaattaaat 7890452  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 7817340 - 7817376
Alignment:
Q  187 atcatgcagaagctaggtttcacaattggatcaataa 223  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  7817340 atcatgcacaagctagttttcacaattggatcaataa 7817376  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 23940522 - 23940610
Alignment:
Q  155 attctatgatgaacaagtgtgacaagtcttgcatcatgcagaagctaggtttcacaattggatcaataaatttcacgtttaaatgaaat 243  Q
    ||||||||||| ||||||| || | ||||||||||||||| ||||||  |||||   || ||||||||||| ||||  |||||| ||||    
T  23940522 attctatgatgcacaagtgagatatgtcttgcatcatgcacaagctacttttcatcgttagatcaataaatctcaccattaaattaaat 23940610  T

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