View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_high_45 (Length: 238)
Name: NF1547_high_45
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_high_45 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold1430 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 6299204 - 6299426
Alignment:
| Q |
17 |
atcaaaaggttaagcccttctcaaacaaactcccatggaagcttcaagagttgaagacccaactctcaggttcaatcttcactatttcagacaatttaaa |
116 |
Q |
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| T |
6299204 |
atcaaaaggttaaacccttctcaaacaaactcccatggaagcttcaagagttgcagactcaactctcaggttcaatcttcactatttcagacaatttaaa |
6299303 |
T |
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| Q |
117 |
aatgttcaagaagataaaaaattcccctgaacaatttggtgagttaataatccgctttttcgaaag-nnnnnnnnttagtcaaatggtttttctttattt |
215 |
Q |
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| T |
6299304 |
aatgttcaagaagataaaaaattcccctgaacaatttggtgagttaataatccgctttttcgaaagaaaaaaaaattagacaaatggtttttctttattt |
6299403 |
T |
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| Q |
216 |
ttattgtttgttatttaacattt |
238 |
Q |
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| T |
6299404 |
ttattgtttgttatttaacattt |
6299426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 25464338 - 25464488
Alignment:
| Q |
17 |
atcaaaaggttaagcccttctcaaacaaactcccatggaagcttcaagagttgaagacccaactctcaggttcaatcttcactatttcagacaatttaaa |
116 |
Q |
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|||||| ||||||||| |||||||||||||| ||||||||||||| |||||| | ||||||||||||||||||| | |||||||||| ||||| ||| || |
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| T |
25464338 |
atcaaatggttaagcctttctcaaacaaacttccatggaagcttcgagagttaacgacccaactctcaggttcagtgttcactattttagacagtttcaa |
25464437 |
T |
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| Q |
117 |
aatgttcaagaagataaaaaattcccctgaacaatttggtgagttaataat |
167 |
Q |
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| T |
25464438 |
aatgttcaagaaaataaaaaattcctctgaaaaatttggtgagttaataat |
25464488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1430 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1430
Description:
Target: scaffold1430; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 1700 - 1824
Alignment:
| Q |
17 |
atcaaaaggttaagcccttctcaaacaaactcccatggaagcttcaagagttgaagacccaactctcaggttcaatcttcactatttcagacaatttaaa |
116 |
Q |
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|||||||| ||||||| || |||| ||||||||||||||||||||||||||||||||| ||||| ||| ||||| | |||||||||| |||| ||| || |
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| T |
1700 |
atcaaaagcttaagcctttttcaaccaaactcccatggaagcttcaagagttgaagactcaactttcatgttcattgttcactattttggacagtttcaa |
1799 |
T |
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| Q |
117 |
aatgttcaagaagataaaaaattcc |
141 |
Q |
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| T |
1800 |
aatgttcaagaaaataaaagattcc |
1824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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