View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_high_47 (Length: 238)
Name: NF1547_high_47
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43486000 - 43485777
Alignment:
| Q |
1 |
aagccggtgtgaagacacatctcgcgacaacaatactccatcagtttcttctactattgacattcaaattgagcgtttttattgtaacatattttatgat |
100 |
Q |
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| T |
43486000 |
aagccggtgtgaagacacatctcgcgacaacaatactccatcagtttcttctactattgacattcaaattgagcgtttttattgtaacatattttatgat |
43485901 |
T |
|
| Q |
101 |
ctcatatttgaaagcaagctctgatctttgtgtgaaccttaaaaaatctttggatcttggtctctaattcagtgtttctttatattccttcatcttacga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43485900 |
ctcatatttgaaagcaagctctgatctttgtgtgaaccttaaaaaatctttggatcttggtctctaattcagtgtttctttatatttcttcatcttacga |
43485801 |
T |
|
| Q |
201 |
atccatcatttaaagcatcatgat |
224 |
Q |
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||||||||||||||| |||||||| |
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| T |
43485800 |
atccatcatttaaagtatcatgat |
43485777 |
T |
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