View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1547_high_5 (Length: 484)
Name: NF1547_high_5
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 177 - 467
Target Start/End: Original strand, 27132302 - 27132590
Alignment:
| Q |
177 |
aattattttagatagttcttgatttaacttctaataggatgcattagtgaaaatatgaaaactagttaaagatatggatttcctttgatatgagtaacca |
276 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
27132302 |
aattattctaaatagttcttgatttaacttctaacaagatgcattagtgaaaatatgaaaactagctaaa-atatggatttcctttgatatgagtaacca |
27132400 |
T |
|
| Q |
277 |
ttgatttatctgctagtaaattcaacacaaaa-tttataatgaaagaactatgaacacgcttagaatcttgcatgatgacaccaaattcacgttattcaa |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27132401 |
ttgatttatctgctagtaaattcaacacaaaaatttataatgaaagaactataaacacgcttacaatcttgcatgatgacaccaaattcacgttattcaa |
27132500 |
T |
|
| Q |
376 |
tccctagttcttgagtcacataatgaaatttaaatgtagcagttatagggaaatgttcagagcatggaaacctatattgtttaagaaattga |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27132501 |
tccctagttcttgagtcacataatgaaatttaaatgtagcagttatagggaaatgttcagagcatggaaacc--aattgtttaagaaattga |
27132590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 24145998 - 24145866
Alignment:
| Q |
8 |
agattattctaggtggtgctaaacttaaatatttttacttcttaatggctaagtaatttacatagacggttataaactattctaggtggttctacatatg |
107 |
Q |
| |
|
|||| |||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||| |
|
|
| T |
24145998 |
agatcattctaggtggttctacacttagacatttttacttcttaatggctaagtaatttacataggcggttataaactattctaggtgattctac--atg |
24145901 |
T |
|
| Q |
108 |
tctttttattttatttaatgactaatcataatcta |
142 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24145900 |
tctttttattttacttaatgactaatcataatcta |
24145866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 24151634 - 24151516
Alignment:
| Q |
36 |
atatttttacttcttaatggctaagtaatttacatagacggttataaactattctaggtggttctacatatgtctttttattttatttaatgactaatca |
135 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
24151634 |
atatttttacttcttaatggctaagaaatttacataggcggttataaactattctaggtggttctac--atgtctttttattttacttaatgactaatca |
24151537 |
T |
|
| Q |
136 |
taatctaataataaactaagt |
156 |
Q |
| |
|
||||||| || || ||||||| |
|
|
| T |
24151536 |
taatctagtattagactaagt |
24151516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 7490564 - 7490701
Alignment:
| Q |
83 |
actattctaggtggttctacatatgtctttttattttatttaatgactaatcataatct----------aataataaactaagtcaaactttgcatcccc |
172 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
7490564 |
actattctaggtggttctgcatatttctttttattttacttagtgactaatcataatctttaataggcaagtaatagactaagtcaaactttgcatccct |
7490663 |
T |
|
| Q |
173 |
tctaaattattttagatagttcttgatttaacttctaa |
210 |
Q |
| |
|
||| |||||| ||||||||| ||||||||| |||||| |
|
|
| T |
7490664 |
tctccattattctagatagttgttgatttaatttctaa |
7490701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University