View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1547_high_51 (Length: 227)

Name: NF1547_high_51
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1547_high_51
NF1547_high_51
[»] chr4 (4 HSPs)
chr4 (9-199)||(21118113-21118303)
chr4 (9-91)||(33319344-33319426)
chr4 (9-70)||(4644895-4644956)
chr4 (9-73)||(30844940-30845004)
[»] chr2 (1 HSPs)
chr2 (11-86)||(16363145-16363220)
[»] chr7 (2 HSPs)
chr7 (9-158)||(4577860-4578009)
chr7 (44-98)||(42229678-42229732)
[»] chr6 (2 HSPs)
chr6 (9-85)||(21624206-21624282)
chr6 (14-87)||(1772023-1772096)
[»] chr1 (1 HSPs)
chr1 (30-94)||(23047416-23047480)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 21118303 - 21118113
Alignment:
Q  9 acatcatcaagtgtcattattatctcctcaatcgaaagatggaaactagacgtctcctcgtgccatctttcaacaaaagcaaacaacaggacgcgatcaa 108  Q
    |||||||||||||||||| ||||||||| |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||    
T  21118303 acatcatcaagtgtcattgttatctccttaatcgaaaaatggaagctagacgtctcctcgttccatctttcaacaaaagcaaacaacaggacatgatcaa 21118204  T
Q  109 gatcaaaataactaacattctttagccgttgaagatcagtggcttgtatggcagctttgaatcatcgctcttgaatcttagccagattttc 199  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21118203 gatcaaaataactaacattctttagccgttgaagaccagtggcttgtatggcagctttgaatcatcgctcttgaatcttagccagattttc 21118113  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 33319344 - 33319426
Alignment:
Q  9 acatcatcaagtgtcattattatctcctcaatcgaaagatggaaactagacgtctcctcgtgccatctttcaacaaaagcaaa 91  Q
    |||||||| ||||||| | | |||||| ||  || |||||||||||| || ||||||||||||||||| || ||||| |||||    
T  33319344 acatcatcgagtgtcactgtcatctccgcacacggaagatggaaactcgatgtctcctcgtgccatctatccacaaatgcaaa 33319426  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 4644895 - 4644956
Alignment:
Q  9 acatcatcaagtgtcattattatctcctcaatcgaaagatggaaactagacgtctcctcgtg 70  Q
    |||||||||||||||| ||| |||||| ||| | |||||||||| || || |||||||||||    
T  4644895 acatcatcaagtgtcactatcatctccccaaacaaaagatggaagctcgatgtctcctcgtg 4644956  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 30844940 - 30845004
Alignment:
Q  9 acatcatcaagtgtcattattatctcctcaatcgaaagatggaaactagacgtctcctcgtgcca 73  Q
    |||||||||||||| | | |||||||||||| || ||| ||||| || || ||||||||||||||    
T  30844940 acatcatcaagtgtgactgttatctcctcaaacggaaggtggaagctggaagtctcctcgtgcca 30845004  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 16363220 - 16363145
Alignment:
Q  11 atcatcaagtgtcattattatctcctcaatcgaaagatggaaactagacgtctcctcgtgccatctttcaacaaaa 86  Q
    |||||||||||||  ||| |||||| |||||  ||||||||| ||||||||||||| |||| ||||||||| ||||    
T  16363220 atcatcaagtgtcgctatgatctccccaatcagaagatggaagctagacgtctccttgtgcaatctttcaataaaa 16363145  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 4578009 - 4577860
Alignment:
Q  9 acatcatcaagtgtcattattatctcctcaatcgaaagatggaaactagacgtctcctcgtgccatctttcaacaaaagcaaacaacaggacgcgatcaa 108  Q
    |||||||||||||||| | | |||||| ||||  ||||||||||  |||||||||  |||| |||||| | |||||||| | |||||| | |  | ||||    
T  4578009 acatcatcaagtgtcactttcatctccccaatgaaaagatggaagttagacgtcttttcgtaccatctctaaacaaaagtagacaacatgccatggtcaa 4577910  T
Q  109 gatcaaaataactaacattctttagccgttgaagatcagtggcttgtatg 158  Q
    ||  ||||||||| ||||| | ||| | ||||||| || |||||||||||    
T  4577909 gaagaaaataactgacattttgtagtcattgaagaccaatggcttgtatg 4577860  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 42229732 - 42229678
Alignment:
Q  44 aagatggaaactagacgtctcctcgtgccatctttcaacaaaagcaaacaacagg 98  Q
    ||||| ||| ||||||| ||||||||| ||||  |||||||||||||||||||||    
T  42229732 aagatagaagctagacgactcctcgtgtcatcactcaacaaaagcaaacaacagg 42229678  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 21624282 - 21624206
Alignment:
Q  9 acatcatcaagtgtcattattatctcctcaatcgaaagatggaaactagacgtctcctcgtgccatctttcaacaaa 85  Q
    |||||||||||||||| | | |||| | | |||| ||||||||||||||| || |||| ||||||||| ||||||||    
T  21624282 acatcatcaagtgtcactgtcatcttccccatcggaagatggaaactagaggtatccttgtgccatctatcaacaaa 21624206  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 1772096 - 1772023
Alignment:
Q  14 atcaagtgtcattattatctcctcaatcgaaagatggaaactagacgtctcctcgtgccatctttcaacaaaag 87  Q
    ||||||||||| | | |||||| |||||||||| | ||| ||||||||||| | ||||||||| |||| |||||    
T  1772096 atcaagtgtcactgtcatctccccaatcgaaaggtagaagctagacgtctctttgtgccatctctcaagaaaag 1772023  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 23047480 - 23047416
Alignment:
Q  30 atctcctcaatcgaaagatggaaactagacgtctcctcgtgccatctttcaacaaaagcaaacaa 94  Q
    |||||| ||||||||||| |||| ||||| |||| |||||| ||||| |||||||||||| ||||    
T  23047480 atctccccaatcgaaagacggaagctagatgtcttctcgtgtcatctctcaacaaaagcagacaa 23047416  T

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