View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_high_52 (Length: 226)
Name: NF1547_high_52
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 53480663 - 53480487
Alignment:
| Q |
1 |
gattggtggaaacaccctattcattgtatgggtgctatgttgtaattaggtggttttggtggtgctctgtttgttggcatcatgactttgtaaattttta |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53480663 |
gattggtggaaacatcctattcattgtatgggtgctatgttgtaattaggtgggtttggtggtgctcagtttgttggcatcatgactttgtaaattttta |
53480564 |
T |
|
| Q |
101 |
atcgatgct-ccccttcgcacaccttgtgcagggtgattattgttgtttgagt-atataattccattttaatttgtt |
175 |
Q |
| |
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| ||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| |
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| T |
53480563 |
accgatgctccccctttgcacaccttgtgcagggtgatcattgttgtttgagtaatataattccattttgatttgtt |
53480487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 31182763 - 31182874
Alignment:
| Q |
66 |
tctgtttgttggcatcatgactttgtaaatttttaatcgatgct-ccccttcgcacaccttgtgcagggtgattattgttgtttgagt-atataattcca |
163 |
Q |
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||||||||||||||||| || ||||||||||||||| ||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
31182763 |
tctgtttgttggcatcacgattttgtaaatttttaaccgatgctccccctttgcacaccttgtgcagggtgatcattgttgtttgagtaatataattcca |
31182862 |
T |
|
| Q |
164 |
ttttaatttgtt |
175 |
Q |
| |
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|||| ||||||| |
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| T |
31182863 |
ttttgatttgtt |
31182874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 43858179 - 43857994
Alignment:
| Q |
1 |
gattggtggaaacaccctattcattgtatgggtgctatgttgtaattaggtggttttggt-----ggtgctct-gtttgttggcatcatgactttgtaaa |
94 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||||||||||| |
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| T |
43858179 |
gattggtggaaacaccctattcattgtatgggtgctatgttgtaattaggtgggttaggttaggtggtgctcttgtttgttggcatcatgactttgtaaa |
43858080 |
T |
|
| Q |
95 |
tttttaatcgatgct-ccccttcgcacaccttgtgcagggtgattattgttgtttgagt-atataattccattttaatttgttcaa |
178 |
Q |
| |
|
|||||| ||||||| |||||| |||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| |
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| T |
43858079 |
tttttacccgatgctccccctttgcactccttgtgcagggtgatcattgttgtttgagtaatataattccattttgatttgttcaa |
43857994 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 1718462 - 1718645
Alignment:
| Q |
1 |
gattggtggaaacaccctattcattgtatgggtgctatgttgtaattaggtggtttt-----ggtggtgctctgtttgttggcatcatgactttgtaaat |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
1718462 |
gattggtggaaacaccctattcattgtatgggtgttatgttgtaattaggtgggtttggttgggtggtgctct-tttgttggcatcatgactttgtaaat |
1718560 |
T |
|
| Q |
96 |
ttttaatcgatgc-tccccttcgcacaccttgtgcagggtgattattgttgtttgagt-atataattccattttaatttgttcaa |
178 |
Q |
| |
|
||||| ||||| ||||||| |||| |||||||||||||||| |||| ||||||||| ||||||||||||||| |||||||||| |
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|
| T |
1718561 |
ttttacctgatgcttcccctttgcactccttgtgcagggtgatcattggtgtttgagtaatataattccattttgatttgttcaa |
1718645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 43883852 - 43883687
Alignment:
| Q |
11 |
aacaccctattcattgtatgggtgctatgttgtaattaggtggttttggtggtgctctgtttgttggcatcatgactttgtaaatttttaatcgatgct- |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| | ||||| | |
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| T |
43883852 |
aacaccctattcattgtatgggtgctatgttgtaactaggtggttttggtggtgctctg-ttgttggcatcataactttgtaaatattttaccgatgatc |
43883754 |
T |
|
| Q |
110 |
ccccttcgcacaccttgtgcagggtgattattgttgtttgagt-atataattccattttaatttgtt |
175 |
Q |
| |
|
|||| | ||||||||||||| |||||| ||||| ||||||| ||||||||||||||| ||||||| |
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| T |
43883753 |
cccccttgcacaccttgtgcggggtgagcattgtgttttgagtaatataattccattttgatttgtt |
43883687 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 46269107 - 46268922
Alignment:
| Q |
1 |
gattggtggaaacaccctattcattgtatgggtgctatgttgtaattaggtggtttt-----ggtggtgctc-tgtttgttggcatcatgactttgtaaa |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||||||||||||||||||||||||| |
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| T |
46269107 |
gattggtggaaacaccctattcattgtatgggtgctatgttgtatttaggtgggtttggttaggtggtgctcttgtttgttggcatcatgactttgtaag |
46269008 |
T |
|
| Q |
95 |
tttttaatcgatgctcccc-ttcgcacaccttgtgcagggtgattattgttgtttgagt-atataattccattttaatttgttcaa |
178 |
Q |
| |
|
|||||| ||||||||||| || ||| |||||||||||||||| |||||||||||| | |||||| |||||||| |||||||||| |
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|
| T |
46269007 |
tttttacccgatgctccccttttgcattccttgtgcagggtgatcattgttgtttgattaatataaatccattttgatttgttcaa |
46268922 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 48242405 - 48242540
Alignment:
| Q |
1 |
gattggtggaaacaccctattcattgtatgggtgctatgttgtaattaggtggttttggtggtgctctgtttgttggcatcatgactttgtaaattttta |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||| ||| |
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| T |
48242405 |
gattggtgccaacaccctattcattgtatgggtgctatgttgtaactaggtggttttggtggtgctatg-ttgttggcatcataactttgtaaatatttt |
48242503 |
T |
|
| Q |
101 |
atcgatgct-ccccttcgcacaccttgtgcagggtga |
136 |
Q |
| |
|
| ||||| | |||| | ||||||||||||| |||||| |
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| T |
48242504 |
accgatgatccccccttgcacaccttgtgcggggtga |
48242540 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 175
Target Start/End: Complemental strand, 81567 - 81394
Alignment:
| Q |
4 |
tggtggaaacaccctattcattgtatgggtgctatgttgtaattaggtggttttg-gtggtgctctgtttgttggcatcatgactttgtaaatttttaat |
102 |
Q |
| |
|
||||||||||||| ||| ||||||||||| | ||||||||||| | |||||| |||||||| || |||| ||||||||| |||||||||| ||| | |
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|
| T |
81567 |
tggtggaaacacctcatttcttgtatgggtgttctgttgtaattattttgttttgtgtggtgctgtg-ttgtaggcatcatgtctttgtaaatattttag |
81469 |
T |
|
| Q |
103 |
cgatgc-tccccttcgcacaccttgtgcagggtgattattgttgtttgagt-atataattccattttaatttgtt |
175 |
Q |
| |
|
|| ||| |||| || ||||| ||| || ||||||| || |||| || ||| ||||||||||||||| ||||||| |
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|
| T |
81468 |
cgttgcttcccttttgcacatcttatgtggggtgatcatcgttggtttagtaatataattccattttgatttgtt |
81394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 3533780 - 3533942
Alignment:
| Q |
24 |
ttgtatgggtgctatgttgtaattaggtggttttggt-----ggtgctct-gtttgttggcatcatgactttgtaaatttttaatcgatgct-ccccttc |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
3533780 |
ttgtatgggtgctttgttgtaattaggtgggttaggttaggtggtgctcttgtttgttggcatcatgactttgtaaatttttaaccgatgctcccccttt |
3533879 |
T |
|
| Q |
117 |
gcacaccttgtgcagggtgattattgttgtttgagt-atataattccattttaatttgttcaa |
178 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
3533880 |
gcactccttgtgcagggtgatcattgttgtttgagtaatataattccattttgatttgttcaa |
3533942 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 3405119 - 3405029
Alignment:
| Q |
87 |
tttgtaaatttttaatcgatgctcccc-ttcgcacaccttgtgcagggtgattattgttgtttgagt-atataattccattttaatttgtt |
175 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
3405119 |
tttgtaaatttttacccgatgctccccctttgcactccttgtgcagggtgataattgttgtttgagtaatataattccattttgatttgtt |
3405029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 41800568 - 41800659
Alignment:
| Q |
3 |
ttggtggaaacaccctattcattgtatgggtgctatgttgtaattaggtggttttggtggtgctctgtttgttggcatcatgactttgtaaat |
95 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||| |||||| |||||| ||||||||||| |||| ||||||||||| | ||||||||||| |
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| T |
41800568 |
ttggtggaaacaccatggtctttgtatgggtgctattttgtaactaggtgattttggtggtgttctg-ttgttggcatcttaactttgtaaat |
41800659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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