View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1547_high_8 (Length: 454)

Name: NF1547_high_8
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1547_high_8
NF1547_high_8
[»] chr4 (17 HSPs)
chr4 (65-302)||(40059369-40059608)
chr4 (289-439)||(40059631-40059781)
chr4 (1-63)||(13012168-13012230)
chr4 (1-63)||(20129290-20129352)
chr4 (1-63)||(47500753-47500815)
chr4 (1-64)||(29319830-29319893)
chr4 (1-64)||(34407409-34407472)
chr4 (1-63)||(25930688-25930750)
chr4 (1-63)||(26439404-26439466)
chr4 (1-59)||(36382470-36382528)
chr4 (1-60)||(6235515-6235574)
chr4 (1-64)||(43355883-43355946)
chr4 (1-43)||(6690360-6690402)
chr4 (1-43)||(30216867-30216909)
chr4 (1-60)||(40528996-40529057)
chr4 (1-63)||(43143709-43143771)
chr4 (2-63)||(7769308-7769369)
[»] chr3 (11 HSPs)
chr3 (1-64)||(22968569-22968632)
chr3 (1-63)||(19390126-19390188)
chr3 (1-63)||(6269551-6269613)
chr3 (1-59)||(34084247-34084305)
chr3 (1-63)||(39771770-39771832)
chr3 (140-234)||(52999745-52999838)
chr3 (1-63)||(11018337-11018399)
chr3 (1-65)||(6503694-6503758)
chr3 (2-60)||(40081865-40081922)
chr3 (1-43)||(45182981-45183023)
chr3 (134-229)||(20631886-20631981)
[»] chr2 (10 HSPs)
chr2 (4-63)||(2958228-2958287)
chr2 (1-64)||(35962694-35962757)
chr2 (1-63)||(42439966-42440028)
chr2 (1-63)||(6403929-6403991)
chr2 (1-63)||(17445164-17445226)
chr2 (1-63)||(18981597-18981658)
chr2 (1-63)||(41251759-41251821)
chr2 (1-63)||(32127266-32127328)
chr2 (1-63)||(16405580-16405642)
chr2 (1-43)||(45418583-45418625)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-63)||(17822-17884)
[»] chr7 (7 HSPs)
chr7 (1-63)||(5555467-5555529)
chr7 (1-59)||(8394109-8394167)
chr7 (1-63)||(14777232-14777294)
chr7 (1-63)||(3114221-3114283)
chr7 (1-59)||(36630800-36630858)
chr7 (1-43)||(8867856-8867898)
chr7 (1-43)||(34389181-34389223)
[»] chr5 (11 HSPs)
chr5 (2-63)||(36293747-36293808)
chr5 (3-63)||(39434676-39434736)
chr5 (1-60)||(13817960-13818019)
chr5 (1-63)||(26283443-26283505)
chr5 (2-59)||(1776502-1776559)
chr5 (1-60)||(10033910-10033969)
chr5 (132-234)||(3158854-3158955)
chr5 (1-63)||(3155756-3155818)
chr5 (149-234)||(27908254-27908338)
chr5 (3-43)||(31680367-31680407)
chr5 (1-41)||(36291373-36291413)
[»] chr1 (7 HSPs)
chr1 (1-66)||(26144232-26144297)
chr1 (128-234)||(31649508-31649614)
chr1 (1-63)||(7433425-7433487)
chr1 (1-56)||(32982181-32982236)
chr1 (1-60)||(42311066-42311125)
chr1 (128-234)||(13197904-13198009)
chr1 (2-35)||(321503-321536)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-64)||(480582-480645)
[»] chr6 (3 HSPs)
chr6 (1-63)||(398597-398659)
chr6 (1-64)||(34948883-34948946)
chr6 (2-63)||(13837801-13837862)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-63)||(502-564)
[»] chr8 (5 HSPs)
chr8 (1-63)||(39914495-39914557)
chr8 (1-59)||(15838270-15838328)
chr8 (1-60)||(29728511-29728570)
chr8 (1-63)||(34136950-34137012)
chr8 (3-43)||(2729323-2729363)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 65 - 302
Target Start/End: Original strand, 40059369 - 40059608
Alignment:
Q  65 gcccaggtgcaaatgcgcgaccatgtctataaaaagaaaatttcaacagagttttaagtgtggaaa--gacaaacctagagagctcaaaagaaggaacct 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  40059369 gcccaggtgcaaatgcgcgaccatgtctataaaaagaaaatttcaacagagttttaagtgtggaaaaagacaaacctagagagttcaaaagaaggaacct 40059468  T
Q  163 tttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacaccattcaaactcatttaacaaaagttacaataaaccac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  40059469 tttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacaccattcaaactcatttaacaaaaggcacaataaaccac 40059568  T
Q  263 tttatatttttattttcataattaacatatcaggaataca 302  Q
    || |||||||||||||||||||||||||||||||||||||    
T  40059569 ttaatatttttattttcataattaacatatcaggaataca 40059608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 40059631 - 40059781
Alignment:
Q  289 atatcaggaatacacatctattgttttattttcgcaattcatatatcaagaccacaaattgaagtgacctaacatgttgacaaaacatctagacaatatt 388  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059631 atatcaggaatacacatctattgttttattttcgcaattaatatatcaagaccacaaattgaagtgacctaacatgttgacaaaacatctagacaatatt 40059730  T
Q  389 taggacaaacatcctttcttctgaattaaaggtcggaatgatgaacaatat 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059731 taggacaaacatcctttcttctgaattaaaggtcggaatgatgaacaatat 40059781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13012230 - 13012168
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  13012230 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 13012168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 20129352 - 20129290
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  20129352 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 20129290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47500815 - 47500753
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  47500815 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 47500753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29319830 - 29319893
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 64  Q
    ||||||||||||||||||||| ||||| ||||| || ||| ||| |||||||||||||||||||    
T  29319830 gcaaaaattatcgatcgagcctggacgaccgccaggggtcaccatacggtagaaccgcccatgc 29319893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34407409 - 34407472
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 64  Q
    |||||||||||||| ||||||||| || |||||||| ||||| ||||||| |||||||||||||    
T  34407409 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgc 34407472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25930750 - 25930688
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    ||||||||||| |||||||||||| || |||||| | ||||||| ||||||||||||||||||    
T  25930750 gcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtagaaccgcccatg 25930688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 26439404 - 26439466
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||| ||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  26439404 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 26439466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36382470 - 36382528
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 59  Q
    ||||||||||| |||||||||||| || |||||||| ||||||| ||||||||||||||    
T  36382470 gcaaaaattatggatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 36382528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6235574 - 6235515
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 60  Q
    ||||||||||||| |||||||||  || |||||| || |||||| |||||||||||||||    
T  6235574 gcaaaaattatcggtcgagcccgagcgaccgcccagaatcgccatacggtagaaccgccc 6235515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43355946 - 43355883
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 64  Q
    |||||||||||||| ||||||||| || | ||| || ||||| ||||||| |||||||||||||    
T  43355946 gcaaaaattatcgaccgagcccgggcgactgcctggggtcgctacacggtggaaccgcccatgc 43355883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6690360 - 6690402
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 43  Q
    |||||||||||||||||||||||| || |||||||| ||||||    
T  6690360 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 6690402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30216867 - 30216909
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 43  Q
    |||||||||||||||||||||||| || |||||||| ||||||    
T  30216867 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 30216909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 40529057 - 40528996
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggc--cgcccggagtcgccacacggtagaaccgccc 60  Q
    ||||||||||||||||||| ||||||| |  ||||| | ||||||| |||||||||||||||    
T  40529057 gcaaaaattatcgatcgagtccggacgacctcgcccagggtcgccatacggtagaaccgccc 40528996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 43143709 - 43143771
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||||||| |||| |  |||||  |||||||||||    
T  43143709 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgcccatg 43143771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 7769369 - 7769308
Alignment:
Q  2 caaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    ||||||||||||||||||||||| || ||||| || ||||||  |||||  |||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatg 7769308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 22968569 - 22968632
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 64  Q
    ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  22968569 gcaaaaattatcgatcgagcccggacgaccgcccggggtcgctacacggtagaaccgcccatgc 22968632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 19390188 - 19390126
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||    
T  19390188 gcaaaaattatcgatcgaacccggacgaccgcccggggtcgccacacggtagaacctcccatg 19390126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6269551 - 6269613
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    ||||||||||||||||||| ||||||| ||||||||  |||| ||||||||||||||||||||    
T  6269551 gcaaaaattatcgatcgagtccggacgaccgcccgggatcgctacacggtagaaccgcccatg 6269613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34084247 - 34084305
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 59  Q
    ||||||||||||||||||| |||| || |||||||| ||||||| ||||||||||||||    
T  34084247 gcaaaaattatcgatcgagtccgggcgaccgcccggggtcgccatacggtagaaccgcc 34084305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 39771832 - 39771770
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||| ||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  39771832 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 39771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 52999745 - 52999838
Alignment:
Q  140 agagagctcaaaagaaggaaccttttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacaccattcaaac 234  Q
    |||||| |||||| | ||||||||| ||| |||||||  ||||||| | || | |||||||| || |||||||||||||||||||||||||||||    
T  52999745 agagagatcaaaatagggaaccttt-aggaaatcaatgggctaaagatcgaggacttttgggataaattctaaggtttggaaacaccattcaaac 52999838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11018337 - 11018399
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    ||||||||||||||||||||| || || |||||||||||||||  |||||  |||||||||||    
T  11018337 gcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccatg 11018399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6503694 - 6503758
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgcg 65  Q
    |||||||| ||||||||||||||| || |||||||| ||||||  |||||  |||||||||||||    
T  6503694 gcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatgcg 6503758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 40081865 - 40081922
Alignment:
Q  2 caaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 60  Q
    ||||||||||||||||||||||| || ||  || ||||||||| |||||||||||||||    
T  40081865 caaaaattatcgatcgagcccgggcgacc-tccagagtcgccatacggtagaaccgccc 40081922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 45183023 - 45182981
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 43  Q
    |||||||||||||||||||||||| || |||||||| ||||||    
T  45183023 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 45182981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 20631886 - 20631981
Alignment:
Q  134 aaacctagagagctcaaaagaaggaaccttttagggaatcaatatgctaaagcttgatgg-cttttggggtatattctaaggtttggaaacaccatt 229  Q
    |||||||||||| |||||||| |||||| |||||| ||| |||  ||||| | |||| ||  |||||||||| |||||| |||||||||||| ||||    
T  20631886 aaacctagagagatcaaaagagggaacc-tttaggaaatgaatgggctaatggttgagggatttttggggtaaattctagggtttggaaacatcatt 20631981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 2958228 - 2958287
Alignment:
Q  4 aaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  2958228 aaaattatcgatcgagcccggacgaccgcccggggtcgccatacggtagaaccgcccatg 2958287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 35962757 - 35962694
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 64  Q
    ||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||||||||||    
T  35962757 gcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtagaaccgcccatgc 35962694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42440028 - 42439966
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||    
T  42440028 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 42439966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6403929 - 6403991
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  6403929 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 6403991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17445164 - 17445226
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||| ||| || |||||||  ||||||||||||||||||||||||||    
T  17445164 gcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtagaaccgcccatg 17445226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18981658 - 18981597
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  18981658 gcaaaaattatcaatcgagcccggacgaccgcccgg-gtcgccatacggtagaaccgcccatg 18981597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41251759 - 41251821
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||||||| ||| | ||||||||||||||||||||    
T  41251759 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcactacacggtagaaccgcccatg 41251821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32127266 - 32127328
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    ||||||||||| |||||||||||| || |||||||| ||||||| ||| ||||||||||||||    
T  32127266 gcaaaaattattgatcgagcccgggcgaccgcccggggtcgccatacgctagaaccgcccatg 32127328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 16405642 - 16405580
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    ||||||||||||||| |||||||| || |||||| | ||| ||| | ||||||||||||||||    
T  16405642 gcaaaaattatcgattgagcccgggcgaccgcccagggtcaccatatggtagaaccgcccatg 16405580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 45418625 - 45418583
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 43  Q
    |||||||||||||||||||||||| || |||||||| ||||||    
T  45418625 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 45418583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17884 - 17822
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||||||||||||||||||||||    
T  17884 gcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtagaaccgcccatg 17822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5555529 - 5555467
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||    
T  5555529 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 5555467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8394167 - 8394109
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 59  Q
    |||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||    
T  8394167 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 8394109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14777232 - 14777294
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || ||||||||  |||| ||||||||||||||||||||    
T  14777232 gcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtagaaccgcccatg 14777294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3114221 - 3114283
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || ||| |||| ||| ||| ||||||||||||||||||    
T  3114221 gcaaaaattatcgatcgagcccgggcgaccgtccggggtcaccatacggtagaaccgcccatg 3114283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36630858 - 36630800
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 59  Q
    |||||||||||||||||||||||| || ||| |||| ||||||| ||||||||||||||    
T  36630858 gcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccatacggtagaaccgcc 36630800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8867856 - 8867898
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 43  Q
    |||||||||||||||||||||||| || |||||||| ||||||    
T  8867856 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8867898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34389181 - 34389223
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 43  Q
    |||||||||||||||||||||||| || |||||||| ||||||    
T  34389181 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 34389223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 36293747 - 36293808
Alignment:
Q  2 caaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||    
T  36293747 caaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtagaaccgcccatg 36293808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 39434736 - 39434676
Alignment:
Q  3 aaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||||    
T  39434736 aaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtagaaccgcccatg 39434676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13818019 - 13817960
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 60  Q
    |||||||||||||||||||||||  || |||||||| ||||||| |||||||||||||||    
T  13818019 gcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtagaaccgccc 13817960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 26283443 - 26283505
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||||||  ||||| ||||||| ||||||||||||    
T  26283443 gcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtggaaccgcccatg 26283505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 1776502 - 1776559
Alignment:
Q  2 caaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 59  Q
    ||||||||||||||||||||||| || |||||||| |||| || ||||||||||||||    
T  1776502 caaaaattatcgatcgagcccgggcgaccgcccggggtcgtcatacggtagaaccgcc 1776559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 10033969 - 10033910
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 60  Q
    |||||||||||||||||||||||| ||  || |||| ||||||| |||||||||||||||    
T  10033969 gcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgccc 10033910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 3158854 - 3158955
Alignment:
Q  132 acaaacctagagagctcaaaagaaggaaccttttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacaccattca 231  Q
    ||||||||||||||  |||||||  ||||||||  ||| ||||||| ||||||| |||| | ||||||| ||| ||| || |||||| ||||||||||||    
T  3158854 acaaacctagagagaacaaaagagtgaacctttg-gggtatcaataagctaaaggttgaggacttttggagtagattttagggtttgaaaacaccattca 3158952  T
Q  232 aac 234  Q
    |||    
T  3158953 aac 3158955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3155756 - 3155818
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    ||||||||||| |||||||||||  || ||||||||  |||||| ||| ||||||||||||||    
T  3155756 gcaaaaattattgatcgagcccgagcgaccgcccgggatcgccatacgatagaaccgcccatg 3155818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 27908254 - 27908338
Alignment:
Q  149 aaaagaaggaaccttttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacaccattcaaac 234  Q
    |||||| ||||||||| ||||||||| || ||||||| |||| || ||||||| ||  ||||| |||||  |||||||||||||||    
T  27908254 aaaagagggaaccttt-agggaatcagtaggctaaaggttgagggtttttgggataggttctagggtttcaaaacaccattcaaac 27908338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 31680407 - 31680367
Alignment:
Q  3 aaaaattatcgatcgagcccggacggccgcccggagtcgcc 43  Q
    |||||||||||||||||||||| || |||||||| ||||||    
T  31680407 aaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 31680367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36291413 - 36291373
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcg 41  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  36291413 gcaaaaattattgatcgaacccggacgaccgcccggagtcg 36291373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26144297 - 26144232
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgcgc 66  Q
    |||||||||||||||||||||||| || |||||||| ||||| ||||||| |||||||||||||||    
T  26144297 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgcgc 26144232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 31649508 - 31649614
Alignment:
Q  128 aaagacaaacctagagagctcaaaagaaggaaccttttagggaatcaatatgctaaagcttgatggcttttgg-ggtatattctaaggtttggaaacacc 226  Q
    |||| |||||||| ||||  ||||||| |||||| || ||| |||||||| ||||||| |||| | ||||||| |||| |||||| ||||||||||||||    
T  31649508 aaaggcaaacctaaagagaacaaaagagggaaccatt-aggaaatcaataggctaaaggttgaggacttttggaggtaaattctagggtttggaaacacc 31649606  T
Q  227 attcaaac 234  Q
    ||||||||    
T  31649607 attcaaac 31649614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7433487 - 7433425
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    ||||||||||| |||||||| ||| || |||||||| || |||| ||||||||||||||||||    
T  7433487 gcaaaaattatagatcgagctcgggcgaccgcccggggttgccatacggtagaaccgcccatg 7433425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32982181 - 32982236
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaacc 56  Q
    ||||||||||||||||| |||||  || |||||||| ||||||| |||||||||||    
T  32982181 gcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgccatacggtagaacc 32982236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42311066 - 42311125
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 60  Q
    |||||||||||||||||||||||| ||  || | || ||||||| |||||||||||||||    
T  42311066 gcaaaaattatcgatcgagcccgggcgatcgtctggggtcgccatacggtagaaccgccc 42311125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 13197904 - 13198009
Alignment:
Q  128 aaagacaaacctagagagctcaaaagaaggaaccttttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacacca 227  Q
    |||| |||||||| ||||  ||||||| ||||||||||| ||||| ||||  |||||| |||| || |||||||  | ||| || | |||||||||||||    
T  13197904 aaaggcaaacctatagagaccaaaagagggaaccttttaaggaataaataaactaaagattga-ggattttgggagagattataggatttggaaacacca 13198002  T
Q  228 ttcaaac 234  Q
    |||||||    
T  13198003 ttcaaac 13198009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 321503 - 321536
Alignment:
Q  2 caaaaattatcgatcgagcccggacggccgcccg 35  Q
    |||||||||||||||||||||||||| |||||||    
T  321503 caaaaattatcgatcgagcccggacgaccgcccg 321536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 480582 - 480645
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 64  Q
    |||||||||||||||||||||||| || |||||||| ||||| ||||||| |||||||||||||    
T  480582 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgc 480645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 398659 - 398597
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  398659 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 398597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34948883 - 34948946
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 64  Q
    ||||||||||||||||||||| || || ||||| || ||||||| |||||||||||||||||||    
T  34948883 gcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtagaaccgcccatgc 34948946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 13837862 - 13837801
Alignment:
Q  2 caaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    ||||||||||||||||| ||||  ||  ||||||| ||||||| ||||||||||||||||||    
T  13837862 caaaaattatcgatcgaacccgagcgatcgcccggggtcgccatacggtagaaccgcccatg 13837801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 564 - 502
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || ||||||||  |||| ||||||| ||||||||||||    
T  564 gcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtggaaccgcccatg 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 39914557 - 39914495
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||||||| ||||| ||||||| |||||| |||||    
T  39914557 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgtccatg 39914495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 15838328 - 15838270
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 59  Q
    |||||||||||| |||||||||||  | |||||||| ||||||| ||||||||||||||    
T  15838328 gcaaaaattatcaatcgagcccgggtgaccgcccggggtcgccatacggtagaaccgcc 15838270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29728511 - 29728570
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 60  Q
    |||||| ||||||||||||| ||| || ||| |||| ||||||| |||||||||||||||    
T  29728511 gcaaaatttatcgatcgagcacgggcgaccgtccggggtcgccatacggtagaaccgccc 29728570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 34136950 - 34137012
Alignment:
Q  1 gcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 63  Q
    |||||||||||||||||||||||| || |||| ||| ||||||| |||||  |||| ||||||    
T  34136950 gcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaaccacccatg 34137012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 2729323 - 2729363
Alignment:
Q  3 aaaaattatcgatcgagcccggacggccgcccggagtcgcc 43  Q
    |||||||||||||||||||||| || |||||||| ||||||    
T  2729323 aaaaattatcgatcgagcccgggcgtccgcccggggtcgcc 2729363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University