View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_10 (Length: 443)
Name: NF1547_low_10
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 43061365 - 43060930
Alignment:
| Q |
1 |
aggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatctcttggtcatgcaagaagcagccaacagttgcaaaa |
96 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061365 |
aggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatctcttggtcatgcaagaagcagccaacagttgcaaaa |
43061266 |
T |
|
| Q |
97 |
tcatcaactgaagctgaatatcagactatagcagccactactcagaaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcac |
196 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061265 |
tcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcac |
43061166 |
T |
|
| Q |
197 |
caacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtacgacagctactataggatgaaacatattgcca-agattatcattttg |
295 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||| |
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| T |
43061165 |
caacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtttttc----actataggatgaaacacattgccatagattatcattttg |
43061070 |
T |
|
| Q |
296 |
tttgcgatctcgt---tgctgccaagaagcttcaagtttcacatgtcccaacaagtcatcagctagccgatcttcacacaaagccgttatcctcggtatg |
392 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | |
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| T |
43061069 |
tttgcgatctcgttgctgctgccaagaagcttcaagtttcacatgtcccaacaagtcatcagctacccgatcttctcacaaagccgttatcctcggtacg |
43060970 |
T |
|
| Q |
393 |
acatcacttccttaaagacaagattggagttattgatgat |
432 |
Q |
| |
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| T |
43060969 |
acatcacttccttaaagacaagattggagttattgatgat |
43060930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 4776004 - 4775572
Alignment:
| Q |
1 |
aggagacacaattgacaggaaa----caggtgcttatttaatttatattggccctaatattatctcttggtcatgcaagaagcagccaacagttgcaaaa |
96 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
4776004 |
aggagacacaattgacaggaaatcaacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaa |
4775905 |
T |
|
| Q |
97 |
tcatcaactgaagctgaatatcagactatagcagccactactcagaaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcac |
196 |
Q |
| |
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|| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4775904 |
tcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcac |
4775805 |
T |
|
| Q |
197 |
caacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtacgacagctactataggatgaaacatattgcca-agattatcattttg |
295 |
Q |
| |
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|||| ||||||| |||||||||| |||||||||||||||||||||||||||| | ||| ||||||||| |||||||||| |||||||||||||| |
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|
| T |
4775804 |
caacaatattctaagacaacattggagctacatatctatgtgcaaaccctgt----ctttcactctaggatgaagcatattgccatagattatcattttg |
4775709 |
T |
|
| Q |
296 |
tttgcgatctcgttgctgccaagaagcttcaagtttcacatgtcccaacaagtcatcagctagccgatcttcacacaaagccgttatcctcggtatgaca |
395 |
Q |
| |
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|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||||||||||||| | || |
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|
| T |
4775708 |
ttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggca |
4775609 |
T |
|
| Q |
396 |
tcacttccttaaagacaagattggagttattgatgat |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
4775608 |
tcacttccttaaagacaagattggagttattgatgat |
4775572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 45192874 - 45192908
Alignment:
| Q |
214 |
aacattagagctacatatctatgtgcaaaccctgt |
248 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |
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|
| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgt |
45192908 |
T |
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