View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_11 (Length: 443)
Name: NF1547_low_11
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Complemental strand, 43416737 - 43416325
Alignment:
| Q |
15 |
ataatactctattgtcttgtcacttcagtatggcagcataagaattaggaataaaggaaagaatgcataaagaatctcttgtgcaacacttctttctcct |
114 |
Q |
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| T |
43416737 |
ataatactctattgtcttgtcacttcagcatggcagcataagaattaggaataaaggaaagaatgcataaagaatctcttgtgcaacacttctttctcct |
43416638 |
T |
|
| Q |
115 |
atgataggagccaactacacttgtttctgtgattgcaatagaaagaaatgacgaggaccactgagatgcaatacaaaaattttatgtcaatcattgaaag |
214 |
Q |
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| T |
43416637 |
atgataggagccaactacacttgtttctgtgattgcaatagaaagaaatgacgaggaccactgagatgcaatacaaaaattttatgtcaatcattgaaag |
43416538 |
T |
|
| Q |
215 |
ttttccctcttatttttctttcctcttttggttacatgaatgattattcccctgtttgttattctatgtgcactatatcttactacagtttctagagtnn |
314 |
Q |
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| T |
43416537 |
ttttccctcttatttttctttcctcttttggttacatgaatggttattcccctgtttgttattctatgtgcactatatcttactacagtttctagagtaa |
43416438 |
T |
|
| Q |
315 |
nnnnntattcaagaatgtagcacttgaggaggtgttgcatgtaattggccatgcaattgggaagctaagaaccgtcgacttttgcttttctttagaagaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43416437 |
aaaaatattcaagaatgtagcacttgaggaggtgttgcatgtaattggccatgcaattgggaagctaagaaccgtcgacttttgcttttctttagaagaa |
43416338 |
T |
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| Q |
415 |
tacatcaattttt |
427 |
Q |
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| T |
43416337 |
tacatcaattttt |
43416325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 102 - 312
Target Start/End: Complemental strand, 43401966 - 43401755
Alignment:
| Q |
102 |
acttctttctcctatgataggagccaactacacttgtttctgtgattgcaatagaaagaaatgacgaggaccactgagatgcaatacaaaaattttatgt |
201 |
Q |
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||||||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||| | ||||| | |||||| |
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| T |
43401966 |
acttctttctcctatgataggagccaaatacacttatttttgtgattgca-tagaaagaaatgacgaggaccaccaagatgcagtgcaaaattcttatgt |
43401868 |
T |
|
| Q |
202 |
caatcattgaaagttttccctcttatttttcttt--cctcttttggttacatgaatgattattcccctgtttgttattctatgtgcactatatcttacta |
299 |
Q |
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|||||||||||| ||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
43401867 |
caatcattgaaaattttccctcttatattttttttccctcttttggttacatgattgattattcccctctttgttattctatgtgcaccatatcttacta |
43401768 |
T |
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| Q |
300 |
cagtttctagagt |
312 |
Q |
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||||| |||||| |
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| T |
43401767 |
tagtttatagagt |
43401755 |
T |
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