View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_12 (Length: 440)
Name: NF1547_low_12
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 40046606 - 40046435
Alignment:
| Q |
1 |
attaattttaaaaaagccttgttcttagataattttcatcaattgtagttttacccgactaaaaatattaaaaaataacatttgtacaacctttttgaga |
100 |
Q |
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| T |
40046606 |
attaattttaaaaaagccttgttcttagataattttcatcaattgtagttttacccgactaaaaatattaaaaaataacatttgtacaacctttttgaga |
40046507 |
T |
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| Q |
101 |
taacatcttctttcctcttcttttgggacaaaaataagagagaattgtctcaaaaatatactataattgttg |
172 |
Q |
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| T |
40046506 |
taacatcttctttcctcttcttttgagacaaaaataagagagaattgtctcaaaaatatactataattgttg |
40046435 |
T |
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Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 249 - 425
Target Start/End: Complemental strand, 40046347 - 40046168
Alignment:
| Q |
249 |
gatatttataacaagatcaatgaactacaggtggacatgctagcgatgtttctattattccttcnnnnnnnnnnnga---cgatgtttctattaaggttg |
345 |
Q |
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| T |
40046347 |
gatatttataacaagatcaatgaactacaggtggacatgctagcgatgtttctattattccttcaaaaaaaaaaaaaaaacgatatttctattaaggttg |
40046248 |
T |
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| Q |
346 |
ccatgccttaccactctcatggccacatggaatgccttggggtagttaccataatctaataagggatgggttgtgataga |
425 |
Q |
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| T |
40046247 |
ccatgccttaccactctcatggccacatggaatgccttggagtagttaccataatctaataagcaatgggttgtgataga |
40046168 |
T |
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