View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1547_low_13 (Length: 429)
Name: NF1547_low_13
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_13 |
 | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 20083092 - 20083495
Alignment:
| Q |
16 |
ggaacaatgcccttgtacatgatacaaattacaaatattcatttcctaaatcatttctaaattatactaattgatactagaaaacatagtttgttgacaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20083092 |
ggaacaatgcccttgtacatgatacaaattacaaacaatcatttcctaaatcatttcaaaattatactaattgatactagaaaacatagtttgttgacaa |
20083191 |
T |
|
| Q |
116 |
caattatagagttaaataaaatttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggcagattga |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20083192 |
caattatagagctaaataaaatttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggtagattga |
20083291 |
T |
|
| Q |
216 |
gtagaacttgattcttgtgcaagaacatttgaataagttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20083292 |
gtagaacttgattcttgtgcaagaacatttgaataagttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaa |
20083391 |
T |
|
| Q |
316 |
gataagaagcaactgtcacgatcgaaggtctggcatccgggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaata |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20083392 |
gataagaagcaactgtcacgatcgaaggtctggcatccgggtcatgttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaata |
20083491 |
T |
|
| Q |
416 |
atct |
419 |
Q |
| |
|
|||| |
|
|
| T |
20083492 |
atct |
20083495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 33 - 419
Target Start/End: Complemental strand, 22210072 - 22209684
Alignment:
| Q |
33 |
catgatacaaattacaaatattcatttcctaaatcatttctaaa-ttatactaattgatactagaaaacatagtttgttgacaacaattatagagttaaa |
131 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| || | |||| |
|
|
| T |
22210072 |
catgatacatattacaaatattcatttcctaaatccttttcaaagttatactaattgatactagaaaacatagtttgttgacaacaattttacaactaaa |
22209973 |
T |
|
| Q |
132 |
-taaaatttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggcagattgagtagaacttgattct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22209972 |
ataaaatttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgaaaattgtgcagaactattggcagattgagtagaacttgattct |
22209873 |
T |
|
| Q |
231 |
tgtgcaagaacatttgaataagttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactg |
330 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22209872 |
agtgcaagaacgtccgaataagttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactg |
22209773 |
T |
|
| Q |
331 |
tcacgatcgaaggtctggcatccgggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
|| | || |||||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
22209772 |
tcgcaattgaaggtctagcatccgggtcattttgaacacataatagaccaatctgaatgtacttaattacttcatttgtagaataatct |
22209684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 419
Target Start/End: Original strand, 18994750 - 18995141
Alignment:
| Q |
30 |
gtacatgatacaaattacaaatattcatttcctaaatcatttctaaa-ttatactaattgatactagaaaacatagtttgttgacaacaattatagagtt |
128 |
Q |
| |
|
||||||||| |||||||||||| | ||||||| | |||||| ||| ||||| | ||| ||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
18994750 |
gtacatgattcaaattacaaatctctatttcctcactcattttcaaagttatatttattaatactagaaaacatagtttgttgacaacaattatacaact |
18994849 |
T |
|
| Q |
129 |
aa-ataaaatttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggcagattgagtagaacttgat |
227 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
18994850 |
attataaaaattaataaactatcgaggaataaaagtacttgcagacatttgattgattgagaatagtacagaactattggcagattgagtagaacttgat |
18994949 |
T |
|
| Q |
228 |
tcttgtgcaagaacatttgaataagttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaa |
327 |
Q |
| |
|
||| |||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18994950 |
tctagtgcaagaacgtcggaataagttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaa |
18995049 |
T |
|
| Q |
328 |
ctgtcacgatcgaaggtctggcatccgggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
||||||| || |||||||| |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
18995050 |
ctgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgcagaataatct |
18995141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 414
Target Start/End: Original strand, 18978827 - 18979194
Alignment:
| Q |
30 |
gtacatgatacaaattacaaatattcatttcctaaatcatttctaaa-ttatactaattgatactagaaaacatagtttgttgacaacaattatagagtt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
18978827 |
gtacatgatacaaattacaaatattcatttcctaaatccttttcaaagttttactaattgatactagaaaacatagtttgttgacaacaattgtacaact |
18978926 |
T |
|
| Q |
129 |
aaa-taaaatttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggcagattgagtagaacttgat |
227 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18978927 |
aaaataaaatttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggcagattgagtagaact---- |
18979022 |
T |
|
| Q |
228 |
tcttgtgcaagaacatttgaataagttctaccatgcaa-gaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagca |
326 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18979023 |
---------------tttgaatatgttctaccatgcaataaaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaagga |
18979107 |
T |
|
| Q |
327 |
actgtcacgatcgaaggtctggcatccgggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaat |
414 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| | |||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18979108 |
actgtcacaatcgaaggtct-acatccgggtcatttcgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaat |
18979194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 131 - 419
Target Start/End: Original strand, 20235178 - 20235466
Alignment:
| Q |
131 |
ataaaatttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggcagattgagtagaacttgattct |
230 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20235178 |
ataaaatttaataaactatagaggaataaaagtacttgcggacatttgattgtttgagaatagtgcagagctattggcagattgagtagaacttgattct |
20235277 |
T |
|
| Q |
231 |
tgtgcaagaacatttgaataagttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactg |
330 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
20235278 |
tgtgcaagaatgtttgaattctttctaccatgcaagaaaaacgcaggttctttcggagttggtaattcaactgcataactgctaaggtaagaagaaactg |
20235377 |
T |
|
| Q |
331 |
tcacgatcgaaggtctggcatccgggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
|| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20235378 |
tcgagattgaaggtctagcatccgggtcatgttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
20235466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 131 - 419
Target Start/End: Original strand, 22129162 - 22129450
Alignment:
| Q |
131 |
ataaaatttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggcagattgagtagaacttgattct |
230 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22129162 |
ataaaatttaataaactatagaggaataaaagtacttgcggacatttgattgtttgagaatagtgcagagctattggcagattgagtagaacttgattct |
22129261 |
T |
|
| Q |
231 |
tgtgcaagaacatttgaataagttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactg |
330 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
22129262 |
tgtgcaagaatgtttgaattctttctaccatgcaagaaaaacgcaggttctttcggagttggtaattcaactgcataactgctaaggtaagaagaaactg |
22129361 |
T |
|
| Q |
331 |
tcacgatcgaaggtctggcatccgggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
|| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22129362 |
tcgagattgaaggtctagcatccgggtcatgttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
22129450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 163 - 419
Target Start/End: Original strand, 18990296 - 18990551
Alignment:
| Q |
163 |
tacttgccgacatttgattgtttgagaataatgcagaactattggcagattgagtagaacttgattcttgtgcaagaacatttgaataagttctaccatg |
262 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
18990296 |
tacttgccgacatttgattgtttgaaaataatgcagaactatgggcagattgagtagaactagattcttgtgcaagaacgtttgaat-ccctctaccatg |
18990394 |
T |
|
| Q |
263 |
caagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactgtcacgatcgaaggtctggcatccgggtcatgt |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
18990395 |
caagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacgatcgaaggtctagcatccgggtcattt |
18990494 |
T |
|
| Q |
363 |
tgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18990495 |
tgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
18990551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 248 - 419
Target Start/End: Original strand, 22085446 - 22085617
Alignment:
| Q |
248 |
ataagttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactgtcacgatcgaaggtctg |
347 |
Q |
| |
|
|||| ||||||| |||| |||||| ||||||| | ||||||||||||| |||| || || |||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
22085446 |
ataatttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtcta |
22085545 |
T |
|
| Q |
348 |
gcatccgggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
|| || ||||||| |||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
22085546 |
gcctctgggtcattttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaataatct |
22085617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 254 - 419
Target Start/End: Original strand, 22001393 - 22001558
Alignment:
| Q |
254 |
tctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactgtcacgatcgaaggtctggcatcc |
353 |
Q |
| |
|
|||||| |||| |||||| ||||||| | |||||||| |||| |||| || || |||||||||||||||||||| ||||| ||| |||||||| || || |
|
|
| T |
22001393 |
tctaccttgcaggaaaaatgcaggttgttgtggagttcgtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcctct |
22001492 |
T |
|
| Q |
354 |
gggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
22001493 |
gggtcattttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaataatct |
22001558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 252 - 419
Target Start/End: Original strand, 21967121 - 21967288
Alignment:
| Q |
252 |
gttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactgtcacgatcgaaggtctggcat |
351 |
Q |
| |
|
|||||||| |||| |||||| ||||||| | ||||||||||||| |||| || || |||||||||||||||||||| ||||| ||| |||||||| || | |
|
|
| T |
21967121 |
gttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcct |
21967220 |
T |
|
| Q |
352 |
ccgggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
| || |||| |||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
21967221 |
ctggatcattttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatct |
21967288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 254 - 419
Target Start/End: Original strand, 21967569 - 21967734
Alignment:
| Q |
254 |
tctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactgtcacgatcgaaggtctggcatcc |
353 |
Q |
| |
|
|||||| |||| |||||| ||||||| | ||||||||||||| |||| || || |||||||||||||||||||| ||||| ||| |||||||| || || |
|
|
| T |
21967569 |
tctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcctct |
21967668 |
T |
|
| Q |
354 |
gggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
|| |||| |||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
21967669 |
ggatcattttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatct |
21967734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 34 - 419
Target Start/End: Original strand, 14591 - 14976
Alignment:
| Q |
34 |
atgatacaaattacaaatattcatttcctaaatcatttctaaattatactaattgatactagaaaacatagtttgttgacaacaattatagagttaaata |
133 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14591 |
atgacacaaattacaaatattcatttcctaaatcatttcaaatttatactaattgatactagaaaacatagtttgttgacaacaattatagagctaaata |
14690 |
T |
|
| Q |
134 |
aaatttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggcagattgagtagaacttgattcttgt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14691 |
aaatttaataaactatcgaggaataaaagtacttgcagacatttgattgaatgagaaaagtgcagaactattggcagattgagtagaacttgattcttgt |
14790 |
T |
|
| Q |
234 |
gcaagaacatttgaataagttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactgtca |
333 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14791 |
gcaagaacgtcggaataagttctaccatgcaagaaaaacgcaggttcttgtggagttggtaaatcaattgcataactgctaagataagaagcaactgtca |
14890 |
T |
|
| Q |
334 |
cgatcgaaggtctggcatccgggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
| || |||||||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14891 |
caattgaaggtctagcattcgggtcattttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
14976 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 419
Target Start/End: Complemental strand, 50709 - 50318
Alignment:
| Q |
30 |
gtacatgatacaaattacaaatattcatttcctaaatcatttctaaa-ttatactaattgatactagaaaacatagtttgttgacaacaattatagagtt |
128 |
Q |
| |
|
||||||||| |||||||||||| | ||||||| | |||||| ||| ||||| | ||| ||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
50709 |
gtacatgattcaaattacaaatctctatttcctcactcattttcaaagttatatttattaatactagaaaacatagtttgttgacaacaattatacaact |
50610 |
T |
|
| Q |
129 |
aa-ataaaatttaataaactatcgaggaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggcagattgagtagaacttgat |
227 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50609 |
attataaaaattaataaactatcgaggaataaaagtacttgcagacatttgattgattgagaatagtgcagaactattggcagattgagtagaacttgat |
50510 |
T |
|
| Q |
228 |
tcttgtgcaagaacatttgaataagttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaa |
327 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50509 |
tcttgtgcaagaacgtcggaataagttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaa |
50410 |
T |
|
| Q |
328 |
ctgtcacgatcgaaggtctggcatccgggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
||||||| || |||||||| |||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50409 |
ctgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatct |
50318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 56 - 419
Target Start/End: Complemental strand, 8217 - 7852
Alignment:
| Q |
56 |
atttcctaaatcatttctaaa-ttatactaattgatactagaaaacatagtttgttgacaacaattatagagttaaa-taaaatttaataaactatcgag |
153 |
Q |
| |
|
|||||||||||| ||| ||| |||||||| || ||| ||||||||||||||||||||||||||||||| | || ||||| |||||||||||||||| |
|
|
| T |
8217 |
atttcctaaatccttttcaaacttatactattttatattagaaaacatagtttgttgacaacaattatacaaatattgtaaaaattaataaactatcgag |
8118 |
T |
|
| Q |
154 |
gaataaaagtacttgccgacatttgattgtttgagaataatgcagaactattggcagattgagtagaacttgattcttgtgcaagaacatttgaataagt |
253 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
8117 |
gaataaaagtacttgcagacatttgattgtatgagaaaagtgcagaactattggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagt |
8018 |
T |
|
| Q |
254 |
tctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactgtcacgatcgaaggtctggcatcc |
353 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| |||| | |
|
|
| T |
8017 |
tctaccatgcaagagaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaattgaaggtctagcattc |
7918 |
T |
|
| Q |
354 |
gggtcatgttgaacacataacagaccaatctgaatgcacttaatgacttcatttgtagaataatct |
419 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7917 |
gggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatct |
7852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 404
Target Start/End: Complemental strand, 47593996 - 47593954
Alignment:
| Q |
362 |
ttgaacacataacagaccaatctgaatgcacttaatgacttca |
404 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
47593996 |
ttgaacacataacaaaccaatctgtatgcacttaataacttca |
47593954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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