View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1547_low_14 (Length: 418)
Name: NF1547_low_14
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_14 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 22137018 - 22136624
Alignment:
| Q |
8 |
agatgaaggtaaaaaaggggtcccactacaaatacactcgatggacatcacttatgtatatcaatgttatataacattgactaataagagtgctctcgtg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22137018 |
agatgaaggtaaaaaaggggtcccactacaaatacactcgatggacatcacttatgtatatcaatgttatataacattgaccaataagagtgctctcgtg |
22136919 |
T |
|
| Q |
108 |
agagaggcagtcgcgacatctagctttatccttatatattatacatgatacaatatttttaacagcttgatatatgtttaaactgcaaaagtatccaaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22136918 |
agagaggcagtcgcgacatctagctttatccatatatattatacatgatacaatatttttaacagcttgatatatgtttaaactgcaaaagtatccaaag |
22136819 |
T |
|
| Q |
208 |
tttcaaacatttatgcatgtaactatttatttcttcagaattattttgttgctttaataccaagcatataataatatttctcatatgtttatatcctttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22136818 |
tttcaaacatttatgcatgtaactatttatttcttcagaattattttgttgctttaataccaagcatataataatatttctcatatgtttatatcctttt |
22136719 |
T |
|
| Q |
308 |
taaattttccatgcatagatatcaccatgcatcttctgcagcgctaccctgatttggcaacaatttctgattcaaacggaagcattatactcaat |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22136718 |
taaattttccatgcatagatatcaccatgcatcttctgcagcgctaccctgatttggcaacaatttctgattcaaacggaagcattatactcaat |
22136624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 21963172 - 21962751
Alignment:
| Q |
8 |
agatgaaggtaaaaaaggggtcccactacaaatacactcgatggacatcacttatgta---------tatcaatgttatataacattgactaataagagt |
98 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
21963172 |
agatgaaggtaaaaa-ggggtcccactacaaatacacccgatggacatcacttatgtaccattaaggtatcaatgttatataacattgaccaataagagt |
21963074 |
T |
|
| Q |
99 |
gctctcgtgagagaggcagtcgcgacatctagctttatccttatatattataca-------------------tgatacaatatttttaacagcttgata |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
21963073 |
gctctcgtgagagaggcagtcgcgacatctagctttatccttatatattatacagagaaatatgtaatattcatgatacaatatttttaacagcttgata |
21962974 |
T |
|
| Q |
180 |
tatgtttaaactgcaaaagtatccaaagtttcaaacatttatgcatgtaactatttatttcttcagaattattttgttgctttaataccaagcatataat |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21962973 |
tatgtttaaactgcaaaagtatccaaagtttcaaacatttatgcatgtaactatttatttcttcagaattattttgttgctttaataccaagcatataat |
21962874 |
T |
|
| Q |
280 |
aatatttctcatatgtttatatcctttttaaattttccatgcatagatatcaccatgcatcttctgcagcgctaccctgatttggcaacaatttctgatt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21962873 |
aatatttctcatatgtttatatcctttttaaattttccatgcatagatatcaccatgcatcttctgcagcgctaccctgatttggcaacaatttctgatt |
21962774 |
T |
|
| Q |
380 |
caaacggaagcattatactcaat |
402 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
21962773 |
caaacggaagcattatactcaat |
21962751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 151 - 402
Target Start/End: Original strand, 18947119 - 18947370
Alignment:
| Q |
151 |
catgatacaatatttttaacagcttgatatatgtttaaactgcaaaagtatccaaagtttcaaacatttatgcatgtaactatttatttcttcagaatta |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18947119 |
catgatacaatatttttaacagcttgatatatgtttaaaatgctaaagtatccaaagtttcaaacatttatgcatgtaactatttatttcttcagaatta |
18947218 |
T |
|
| Q |
251 |
ttttgttgctttaataccaagcatataataatatttctcatatgtttatatcctttttaaattttccatgcatagatatcaccatgcatcttctgcagcg |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18947219 |
ttttgttgctttaataccaagcatataataatatttctcatatgtttatatcctttttaaattttccatgcatagatatcaccatgcatcttctgcagcg |
18947318 |
T |
|
| Q |
351 |
ctaccctgatttggcaacaatttctgattcaaacggaagcattatactcaat |
402 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18947319 |
ctaccctggtttggcaacaatttctgattcaaacggaagcattatactcaat |
18947370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 398
Target Start/End: Complemental strand, 21744737 - 21744621
Alignment:
| Q |
282 |
tatttctcatatgtttatatcctttttaaattttccatgcatagatatcaccatgcatcttctgcagcgctaccctgatttggcaacaatttctgattca |
381 |
Q |
| |
|
|||| ||||||||||| ||| ||| ||||| ||||||| | |||||||||||||||||||||||||||||||||| | ||||| || |||||||||||| |
|
|
| T |
21744737 |
tattgctcatatgtttttattatttataaatcttccatgaacagatatcaccatgcatcttctgcagcgctaccctaacttggccaccatttctgattca |
21744638 |
T |
|
| Q |
382 |
aacggaagcattatact |
398 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
21744637 |
aatggaagcattatact |
21744621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 50807529 - 50807602
Alignment:
| Q |
325 |
gatatcaccatgcatcttctgcagcgctaccctgatttggcaacaatttctgattcaaacggaagcattatact |
398 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| | | ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
50807529 |
gatatcaccatgtatcttcttcagcgctactcaaacttggcaacaatttctgattcaaatggaagcattatact |
50807602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 50868348 - 50868275
Alignment:
| Q |
325 |
gatatcaccatgcatcttctgcagcgctaccctgatttggcaacaatttctgattcaaacggaagcattatact |
398 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| | | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50868348 |
gatatcaccatgtatcttcttcagcgctactcaaacttggcaacaatttctgattcaaatggaagcattatact |
50868275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 18946855 - 18946901
Alignment:
| Q |
98 |
tgctctcgtgagagaggcagtcgcgacatctagctttatccttatat |
144 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18946855 |
tgctctcgtgagagaggccgtcgcgacatctagctttattcttatat |
18946901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 18946815 - 18946851
Alignment:
| Q |
11 |
tgaaggtaaaaaaggggtcccactacaaatacactcg |
47 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
18946815 |
tgaaggtaaaaaaggggtcccactataaatgcactcg |
18946851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 398
Target Start/End: Original strand, 39750195 - 39750279
Alignment:
| Q |
314 |
ttccatgcatagatatcaccatgcatcttctgcagcgctaccctgatttggcaacaatttctgattcaaacggaagcattatact |
398 |
Q |
| |
|
|||||| || ||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
39750195 |
ttccatacacagatatcaccatgtatcttcttcagcgctaccctaacttggcaacaatttctgattcaaatggaagcattatact |
39750279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 29989982 - 29990015
Alignment:
| Q |
66 |
tatcaatgttatataacattgactaataagagtg |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
29989982 |
tatcaatgttatataacattgaccaataagagtg |
29990015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 398
Target Start/End: Complemental strand, 19055933 - 19055831
Alignment:
| Q |
295 |
tttatatcctttttaaattttccatgcatagatatcaccatgcatcttctgcagcgctaccctgatttggcaacaatttctgattcaaacggaagcatta |
394 |
Q |
| |
|
|||||||||||| | ||| |||||| ||| |||||||||||| ||||||| ||||||||| | | ||||||||||||||||||||||| |||||||||| |
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|
| T |
19055933 |
tttatatcctttcttaatgttccatacat-gatatcaccatgtatcttcttcagcgctactcaaacttggcaacaatttctgattcaaatggaagcatta |
19055835 |
T |
|
| Q |
395 |
tact |
398 |
Q |
| |
|
|||| |
|
|
| T |
19055834 |
tact |
19055831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 46719950 - 46719983
Alignment:
| Q |
66 |
tatcaatgttatataacattgactaataagagtg |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
46719950 |
tatcaatgttatataacattgaccaataagagtg |
46719983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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