View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1547_low_17 (Length: 376)
Name: NF1547_low_17
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 47 - 352
Target Start/End: Original strand, 5954460 - 5954764
Alignment:
| Q |
47 |
gaacataaagcaacaaacaattacggaaatattaatttataattcaaattcaatgatgacaaccacattgactttccttcacaggnnnnnnnnnngttca |
146 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
5954460 |
gaacataaaacaacaaacaattacgaaaatattaatttataattcaaattcaatgatgacaaccacatggactttccttcactggaaaaaaaaatgttca |
5954559 |
T |
|
| Q |
147 |
aaacttttgtgcaacannnnnnnccatatttggtcaagaaccttagcagcagggaaagctttaacaacagagaaaggctcgtcaagtttaccaagaacca |
246 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
5954560 |
aaacttttatgcaacatttttttccatatttggtcaagaaccttagcagcagggaaagctttaacaacagagaaaggctcaacaggtttaccaagaacca |
5954659 |
T |
|
| Q |
247 |
aaattgcgaaatnnnnnnnttatggaaacaaaaattgaggattgaccatgataagaggatcaaactacatttaagcctaaattattgagtttaggggata |
346 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5954660 |
aaattgcgaaataaaaaa-tgatgggaacaaaaattgaggattgaccatgataagaggatcaaactacatttaagcctaaattattgagtttaggggata |
5954758 |
T |
|
| Q |
347 |
taaaga |
352 |
Q |
| |
|
|||||| |
|
|
| T |
5954759 |
taaaga |
5954764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 5689613 - 5689655
Alignment:
| Q |
72 |
gaaatattaatttataattcaaattcaatgatgacaaccacat |
114 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
5689613 |
gaaatattaatttatggtccaaattcaatgatgacaaccacat |
5689655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University