View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_18 (Length: 372)
Name: NF1547_low_18
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 3 - 355
Target Start/End: Original strand, 4329292 - 4329644
Alignment:
| Q |
3 |
aggaggagcagagagctgaggattacctgcatagttaagtgcttcaaagctctgaagttgagtgctagttggaattcttcctgataagttgttgtttgat |
102 |
Q |
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| T |
4329292 |
aggaggaccacaaagctgaggattacctgcatagttaagtgcttcaaagctctgaagttgagtgctagttggaattcttcctgataagttgttgtttgat |
4329391 |
T |
|
| Q |
103 |
agattcaggaaacttaaaaatgacaaatcagacatactttgaggtatttgacctgaaattttgttcaatgaaagatcaagtgattctaacaatttcattt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329392 |
agattcaggaaacttaaaaatgacaaatcagacatactttgaggtatttgacctgaaattttgttcaatgaaagatcaagtgattctaacaatttcattt |
4329491 |
T |
|
| Q |
203 |
tccccatgtcatttggtatctctccataaagactgttttgagacaagttcaaaaaccgaagcgcggatagcttcgcaatttgaggaggaatagttccaaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329492 |
tccccatgtcatttggtatctctccataaagactgttttgagacaagttcaaaaaccgaagcgcggatagcttcgcaatttgaggaggaatagttccaaa |
4329591 |
T |
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| Q |
303 |
aagattattacttgaaagatcaatcattctcacaagtatcaagttgtctctat |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329592 |
aagattattacttgaaagatcaatcattctcacaagtatcaagttgtctctat |
4329644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 355
Target Start/End: Complemental strand, 4498617 - 4498267
Alignment:
| Q |
3 |
aggaggagcagagagctgaggattacctgcatagttaagtgcttcaaagctctgaagttgagtgctagttggaattcttcctgataagttgttgtttgat |
102 |
Q |
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|||||||||| | |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4498617 |
aggaggagcacatagctaaggattacatgcatagctaagtgcttcaaagctctgaagttgagtgctagttggaattcttcctgataagttgttgtttgat |
4498518 |
T |
|
| Q |
103 |
agattcaggaaacttaaaaatgacaaatcagacatactttgaggtatttgacctgaaattttgttcaatgaaagatcaagtgattctaacaatttcattt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4498517 |
agattcaggaaacttaaaaatgacaaatcagacatactttgaggtatttgacatgaaattttgttcaatgaaagatcaattgattctaacaatttcattt |
4498418 |
T |
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| Q |
203 |
tccccatgtcatttggtatctctccataaagactgttttgagacaagttcaaaaaccgaagcgcggatagcttcgcaatttgaggaggaatagttccaaa |
302 |
Q |
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|||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| || |||||||||| ||||||||| |||||||||| ||| |
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| T |
4498417 |
tccccatgtcatttggta--tctccataaagacggtttcgagacaagttcaaaaaccgaagtgcagatagcttcgaaatttgaggtggaatagttctaaa |
4498320 |
T |
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| Q |
303 |
aagattattacttgaaagatcaatcattctcacaagtatcaagttgtctctat |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4498319 |
aagattattacttgaaagatcaatcattctcacaagtatcaaattgtctctat |
4498267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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