View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_19 (Length: 360)
Name: NF1547_low_19
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 32770486 - 32770152
Alignment:
| Q |
18 |
atatatacctccagttggtcgccaatgtgaattacaaaagccgaggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaa |
117 |
Q |
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| T |
32770486 |
atatatacctccagttggtcgccaatgtgaattacaaaagccgaggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccttgaa |
32770387 |
T |
|
| Q |
118 |
catcatttgggacaagaagcgtgataaaacacatgtctgaatgagctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctt |
217 |
Q |
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| T |
32770386 |
catcatttgggacaagaagcgtgataaaacacatgtctgaatgagctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctt |
32770287 |
T |
|
| Q |
218 |
taacaagtgaaccatgttatcaccccctgcatactcctttagctcatgaccttcaagccctaaccctattgacaagtttttacacaacttgtctacaacc |
317 |
Q |
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| T |
32770286 |
taacaagtgaaccatgttatcaccccctgcatactcctttagctcatgaccttcaagccctaaccctattgacaagtttttgaacaacttgtctacaacc |
32770187 |
T |
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| Q |
318 |
ccatgtaggtgtttgccgtattcctcgttcatctc |
352 |
Q |
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| T |
32770186 |
ccatgtaggtgtttgccgtattcctcgttgatctc |
32770152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 24400581 - 24400375
Alignment:
| Q |
22 |
atacctccagttggtcgccaatgtgaattacaaaagccgaggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatc |
121 |
Q |
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| T |
24400581 |
atacctccatttggtcaccaatgtgaatgacaagggcattagggacatacttaacatcataccattgaccatctctagaggcttgaaggccctgcacttc |
24400482 |
T |
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| Q |
122 |
atttgggacaagaagcgtgataaaacacatgtctgaatgagctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaac |
221 |
Q |
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||| ||||| | || || | |||| |||| |||| || | || ||||| ||||||||||||||| || || ||||||||||||||||| || ||| |
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| T |
24400481 |
attagggaccaaaatggtaagaaaagacatatctgtgtgtggaggcacacctagaacaagatcaggaactggacatggtgggtaatagttgattttcaac |
24400382 |
T |
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| Q |
222 |
aagtgaa |
228 |
Q |
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| ||||| |
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| T |
24400381 |
atgtgaa |
24400375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 214
Target Start/End: Complemental strand, 24407355 - 24407203
Alignment:
| Q |
62 |
ggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatga |
161 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| || | ||||| || ||| ||||||| |||| || |
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| T |
24407355 |
ggggacatacttaacatcataccattgaccatctctagaggcttgaagaccctccacttcattgggtatgagaagggtaatataacacatatctgtgtgt |
24407256 |
T |
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| Q |
162 |
gctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgat |
214 |
Q |
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| ||| ||||| || || ||||||||||| || || |||||||| || ||||| |
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| T |
24407255 |
ggtggcacacctagtaccagatcaggacatggacatggtgggtagtaattgat |
24407203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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