View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_21 (Length: 338)
Name: NF1547_low_21
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 26203472 - 26203161
Alignment:
| Q |
11 |
cacagattccacatttggtaggtttatagattacattgatttactgatatgaataatcaaataaaactgcattttgaattaatcatgtacttgttgaaag |
110 |
Q |
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| T |
26203472 |
cacagattccacatttggtaggtttatagattacattgatttactgatatgaataatcaaataaaactgcactttgaattaatcatgtacttgttgaaag |
26203373 |
T |
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| Q |
111 |
aaagaaaaaacactgacccctatagttgtattttgggacactgatactactaaacaggcaaagaattgacaagctatgaaaaaccaaagcctaatatagg |
210 |
Q |
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| T |
26203372 |
aaagaaaaaacactgacccctatagttgtattttgggacactgatactactaaacaggcaaagaattgacaagctatgaaaaaccaaagcctaatatagg |
26203273 |
T |
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| Q |
211 |
aatccacagatatgtgtttgtcctattcaagcnnnnnnngatgaagaagcactcaattgttgcacctttttcaagggatcactttaacacacgtgccttt |
310 |
Q |
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| T |
26203272 |
aatccacagatatgtgtttgtcctattcaagcaagaaaaggggaagaagcactcaattgttgctcctttttcaagggatcactttaacacacgtgccttt |
26203173 |
T |
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| Q |
311 |
tctgctcaaaat |
322 |
Q |
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|||||||||||| |
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| T |
26203172 |
tctgctcaaaat |
26203161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 26196381 - 26196333
Alignment:
| Q |
97 |
gtacttgttgaaagaaagaaaaaacactgacccctatagttgtattttg |
145 |
Q |
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| T |
26196381 |
gtacttgttgaaagaaagaaaatacactgagccctatagtaatattttg |
26196333 |
T |
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