View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_27 (Length: 295)
Name: NF1547_low_27
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 12514578 - 12514310
Alignment:
| Q |
17 |
catttggttcttaccaaaactttcatttgggacgtgttaacgaataaaaataatagttgaaaacactactcttcaaattataggcatatactccttaaaa |
116 |
Q |
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| T |
12514578 |
catttagttcttaccaaaactttcatttgggacgtgttaacgaataaaagtaatagttaaaaacactactcttcaaattataggcatatactccttaaaa |
12514479 |
T |
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| Q |
117 |
gtacaattttaaagnnnnnnntcagaacaaagaactgtctgtccaatgcacggaacaattatatttttgcagtaataataatactcaaaatatataatga |
216 |
Q |
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||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12514478 |
gtataattttaaagaaaaaaatcagaacaaagaactgtctgttcaatgcacggaacaattatatttttgcagtaataataatactcaaaatatataatga |
12514379 |
T |
|
| Q |
217 |
tgttcagataaaaatgcatcatccactaccatcacaatatttacatgaagcttgaatatatgacctatg |
285 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12514378 |
tgttcagataaaaatgcatcatccactaccgtcacaatatttacatgaagcttgaatatatgacctatg |
12514310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 32283777 - 32283635
Alignment:
| Q |
138 |
tcagaacaaagaactgtctgtccaatgcacggaacaattatatttttgcagtaataataatactcaaaatatataatgatgttcagataaaaatgcatca |
237 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32283777 |
tcagaacaaagaactgtctgtccaatgcacagaacaattatatttttgcagtaataataatactcaaaatatataatgatgttcagataaaaatgcatca |
32283678 |
T |
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| Q |
238 |
tccactaccatcacaatatttacatgaagcttgaatatatgac |
280 |
Q |
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| T |
32283677 |
tccactaccgtcacaatagttacatgaagcttgaatatatgac |
32283635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 32284018 - 32283899
Alignment:
| Q |
17 |
catttggttcttaccaaaactttc--atttgggacgtgt----taacgaataaaaataatagttgaaaacactactcttcaaattataggcatatactcc |
110 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
32284018 |
catttggttcttaccaaaactttctcatttgggacgtgtacgttaacgaataaaagtaattgttaaaaacactactcttcaaattataggcatatactcc |
32283919 |
T |
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| Q |
111 |
ttaaaagtacaattttaaag |
130 |
Q |
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|||||||||||||||||||| |
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| T |
32283918 |
ttaaaagtacaattttaaag |
32283899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 15703012 - 15702870
Alignment:
| Q |
138 |
tcagaacaaagaactgtctgtccaatgcacggaacaattatatttttgcagtaataataatactcaaaatatataatgatgttcagataaaaatgcatca |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15703012 |
tcagaacaaagaactgtctgtccaatgcacagaacaattatatttttgcagtaataataatactcaaaatatataatgatgttcagataaaaatgcatca |
15702913 |
T |
|
| Q |
238 |
tccactaccatcacaatatttacatgaagcttgaatatatgac |
280 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
15702912 |
tccactaccgtcacaatagttacatgaagcttgaatatatgac |
15702870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 15703253 - 15703134
Alignment:
| Q |
17 |
catttggttcttaccaaaactttc--atttgggacgtgt----taacgaataaaaataatagttgaaaacactactcttcaaattataggcatatactcc |
110 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
15703253 |
catttggttcttaccaaaactttctcatttgggacgtgtacgttaacgaataaaagtaattgttaaaaacactactcttcaaattataggcatatactcc |
15703154 |
T |
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| Q |
111 |
ttaaaagtacaattttaaag |
130 |
Q |
| |
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|||||||||||||||||||| |
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| T |
15703153 |
ttaaaagtacaattttaaag |
15703134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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