View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_29 (Length: 290)
Name: NF1547_low_29
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_29 |
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| [»] scaffold0064 (2 HSPs) |
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Alignment Details
Target: scaffold0064 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 54913 - 55069
Alignment:
| Q |
110 |
ccttgtgacttttttatgaaggaatctaccatgtgacttgtgaatgtgaatgtggaaaccaagatgaaaccactaggcacacgattataaaggtatctga |
209 |
Q |
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| T |
54913 |
ccttgtgacttttttatgaaggaatctaccatgtgacttgtgaatgtgaatgtggaaaccaagatgaaaccactaggtacacgattataaaggcatctg- |
55011 |
T |
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| Q |
210 |
aaactaaatggtttccaagcacaagatcatgtccactcctcaataacatccatataca |
267 |
Q |
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| T |
55012 |
aaacttcatggtttccaagcacaagatcatgcccactcctcaatcaaatccatataca |
55069 |
T |
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Target: scaffold0064; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 54804 - 54886
Alignment:
| Q |
1 |
aagaaacagctcatggtatttttaaatatatatgacatgacttcaatatgtctaaaatcaacgttactttaatatattgttcg |
83 |
Q |
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| T |
54804 |
aagaaacagctcatggtatttttaaatatatatgacatgacttcaatatgtctaaaatcaacgttactttaatatatggttcg |
54886 |
T |
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