View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_33 (Length: 269)
Name: NF1547_low_33
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 31040498 - 31040757
Alignment:
| Q |
1 |
aaattataaagtttcatttcactcttcatatattcatttgaaattacagattcctaaacttatatatgaaaatgaaatcaccagtatccttgaagtagta |
100 |
Q |
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| T |
31040498 |
aaattataaagtttcatttcactcttcatatattcatttgaaattacagattcctaaacttatatatgaaaatgaaatcaccagtatccttgaagtagta |
31040597 |
T |
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| Q |
101 |
tattcatagaatacnnnnnnnnnnncaaaa----cagagtaatgggaacagtggaagcactaaataagagtattcatagaaataatgaatacattgcagc |
196 |
Q |
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|||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040598 |
tattcatagaatccaaaaaaaaaaaaaaaaaaaacagagtaatgggaacagtggaagcactaaataagagtattcatagaaataatgaatacattgcagc |
31040697 |
T |
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| Q |
197 |
aagaaagaaggtgtaatgaaaatagtggagaagtaagagaggtgtgtaaggtatctgatg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040698 |
aagaaagaaggtgtaatgaaaatagtggagaagtaagagaggtgtgtaaggtatctgatg |
31040757 |
T |
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