View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_36 (Length: 267)
Name: NF1547_low_36
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 31873529 - 31873260
Alignment:
| Q |
1 |
tgaaactaaatatttttcaatatgccaataatattccccatgtaattgaatgctaaataaccaatctggatatagacataaaagtataagtattgattca |
100 |
Q |
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| T |
31873529 |
tgaaactaaatatttttcaatatgccaataatattccccatgtaattgaatgctaaataaccaatctggatatagacataaaagtataagtattgattca |
31873430 |
T |
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| Q |
101 |
aagaatcatagccaaaagtcagtgtaacagataaatatgtaaaatagtagtggtcccatattggagcatagtaatggtatgacgcatgtactatactact |
200 |
Q |
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| T |
31873429 |
aagaatcatagccaaaagtcagtgcaacggataaatatgtaaaatagtagtggtcccatattggagcatagtaatggtatgacgcatgtactatactact |
31873330 |
T |
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| Q |
201 |
taggaat---aagnnnnnnnnnttatcctatcaatatcatccaatcaaggccatgcaactacacataaac |
267 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31873329 |
taggaataagaagaaaaaaaaattatcctatcaatatcatccaatcaaggccatgcaactacacataaac |
31873260 |
T |
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