View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_4 (Length: 512)
Name: NF1547_low_4
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 93 - 493
Target Start/End: Original strand, 40208081 - 40208481
Alignment:
| Q |
93 |
caagtcacgttatgtgggatagttcagtatctaaaccttgttggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208081 |
caagtcacgttatgtgggatagttcagtatctaaaccttgtaggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
40208180 |
T |
|
| Q |
193 |
gatcttaatcatttagttaatttcattgaagaaaatatccaaagaatatggtataattgactttggttaattctgtatgaaacagggcaattgaaaggtc |
292 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208181 |
gatcttaatcatttagttaatttcattgaagaaaatatccaaagaatatggtataattaactttggttaattctgtatgaaacagggcaattgaaaggtc |
40208280 |
T |
|
| Q |
293 |
aaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaatt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208281 |
aaattgtttccatagaagtggtggaaaagatccatgtcacatgaaaagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaatt |
40208380 |
T |
|
| Q |
393 |
ccagattttgatcaattgtggtggctctccagtttagccgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagttatag |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208381 |
ccagattttgatcaattgtggtggctctccagtttagctgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagttatag |
40208480 |
T |
|
| Q |
493 |
g |
493 |
Q |
| |
|
| |
|
|
| T |
40208481 |
g |
40208481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 93 - 493
Target Start/End: Original strand, 40200447 - 40200847
Alignment:
| Q |
93 |
caagtcacgttatgtgggatagttcagtatctaaaccttgttggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40200447 |
caagtcacgttatgtgggatagttcagtatctcaatcttgcgggggctgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
40200546 |
T |
|
| Q |
193 |
gatcttaatcatttagttaatttcattgaagaaaatatccaaagaatatggtataattgactttggttaattctgtatgaaacagggcaattgaaaggtc |
292 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40200547 |
gatcttaatcatatagttaatttcatccaagaaaatatccaaggaatattgtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtc |
40200646 |
T |
|
| Q |
293 |
aaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaatt |
392 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
40200647 |
aaattgtttccatagaagtgggggaaaagatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctcaaatt |
40200746 |
T |
|
| Q |
393 |
ccagattttgatcaattgtggtggctctccagtttagccgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagttatag |
492 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40200747 |
ccagattttgatcaattatggtggctctccagtttagctgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagttatag |
40200846 |
T |
|
| Q |
493 |
g |
493 |
Q |
| |
|
| |
|
|
| T |
40200847 |
g |
40200847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 93 - 494
Target Start/End: Original strand, 40203947 - 40204349
Alignment:
| Q |
93 |
caagtcacgttatgtgggatagttcagtatctaaaccttgttggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || |
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|
| T |
40203947 |
caagtcacgttatgtgggatagttcagtatctcaaccttgttggagttgccattggatacactatagcctcagccataagcatgatgtaagttt----ga |
40204042 |
T |
|
| Q |
193 |
gatcttaatcattt-----agttaatttcattgaagaaaatatccaaagaatatggtataattgactttggttaattctgtatgaaacagggcaattgaa |
287 |
Q |
| |
|
||||||| |||| | ||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
40204043 |
gatcttattcatattttaaagttaattttattcaagaaaatatccaaggaatatggtagaattgactttggttaattttgtatgaaacagggcaattgaa |
40204142 |
T |
|
| Q |
288 |
aggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctc |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40204143 |
aggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctc |
40204242 |
T |
|
| Q |
388 |
aaattccagattttgatcaattgtggtggctctccagtttagccgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagt |
487 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
40204243 |
aaattccagattttgatcaaatatggtggctctccagtttagctactgttatgtcctttatatactccacaattggccttggccttggtattgggaaagt |
40204342 |
T |
|
| Q |
488 |
tataggt |
494 |
Q |
| |
|
||||||| |
|
|
| T |
40204343 |
tataggt |
40204349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 44315716 - 44315679
Alignment:
| Q |
384 |
tctcaaattccagattttgatcaattgtggtggctctc |
421 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| |
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|
| T |
44315716 |
tctcaaattccagattttgataaaatgtggtggctctc |
44315679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 276 - 494
Target Start/End: Complemental strand, 10299443 - 10299225
Alignment:
| Q |
276 |
agggcaattgaaaggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaa |
375 |
Q |
| |
|
||||||||| ||||||| ||||||||||| || |||||||||||| ||||||| ||||||||| | || ||||||||||||||||||||| ||| | | |
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|
| T |
10299443 |
agggcaattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaacatttacatgatttcatttggtattgtggaga |
10299344 |
T |
|
| Q |
376 |
ttatattctctcaaattccagattttgatcaattgtggtggctctccagtttagccgctgttatgtcctttacatactccacaattggtcttggccttgg |
475 |
Q |
| |
|
| | |||||||||||||| || |||||||| || ||||||||||| | |||| |||||||||||||| |||||||| || ||||| || || ||||| |
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|
| T |
10299343 |
tctttttctctcaaattcctgactttgatcagttatggtggctctctgctctagctgctgttatgtccttcacatactcaactattggcctcggtcttgg |
10299244 |
T |
|
| Q |
476 |
tattggaaaagttataggt |
494 |
Q |
| |
|
||| || |||||||||||| |
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|
| T |
10299243 |
tatcggtaaagttataggt |
10299225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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