View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1547_low_41 (Length: 250)

Name: NF1547_low_41
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1547_low_41
NF1547_low_41
[»] chr4 (17 HSPs)
chr4 (1-216)||(2733215-2733430)
chr4 (71-206)||(17883973-17884107)
chr4 (128-209)||(3155505-3155586)
chr4 (156-215)||(30066881-30066940)
chr4 (129-215)||(2987085-2987171)
chr4 (132-197)||(6364063-6364128)
chr4 (132-173)||(8422928-8422969)
chr4 (75-148)||(28581945-28582017)
chr4 (128-216)||(26520316-26520404)
chr4 (128-172)||(52326196-52326240)
chr4 (143-209)||(17751224-17751290)
chr4 (135-209)||(44863056-44863130)
chr4 (71-116)||(8468942-8468987)
chr4 (136-209)||(49004065-49004138)
chr4 (139-207)||(21731751-21731819)
chr4 (62-106)||(27623642-27623686)
chr4 (71-175)||(56480284-56480387)
[»] chr1 (15 HSPs)
chr1 (131-207)||(10744212-10744288)
chr1 (92-216)||(48064204-48064327)
chr1 (71-173)||(49888705-49888806)
chr1 (128-216)||(46252769-46252857)
chr1 (69-216)||(37841893-37842039)
chr1 (93-216)||(38578423-38578544)
chr1 (130-198)||(8852773-8852841)
chr1 (161-209)||(38247345-38247393)
chr1 (161-206)||(14331684-14331729)
chr1 (128-216)||(4549761-4549849)
chr1 (124-204)||(9507083-9507163)
chr1 (71-106)||(37241853-37241888)
chr1 (129-206)||(5894251-5894328)
chr1 (132-185)||(23544731-23544784)
chr1 (74-170)||(42556665-42556760)
[»] chr8 (18 HSPs)
chr8 (124-207)||(26215400-26215483)
chr8 (128-202)||(3936758-3936832)
chr8 (128-209)||(37444502-37444583)
chr8 (128-189)||(41475147-41475208)
chr8 (161-209)||(14956425-14956473)
chr8 (126-209)||(34236064-34236148)
chr8 (73-172)||(4558737-4558835)
chr8 (92-209)||(900749-900864)
chr8 (74-148)||(2699269-2699342)
chr8 (138-204)||(8216787-8216853)
chr8 (130-204)||(16210975-16211049)
chr8 (81-159)||(27728062-27728139)
chr8 (125-203)||(35453707-35453784)
chr8 (154-208)||(40859831-40859885)
chr8 (128-185)||(8407336-8407393)
chr8 (124-169)||(31315536-31315581)
chr8 (71-148)||(31862456-31862532)
chr8 (160-209)||(40637422-40637471)
[»] chr3 (14 HSPs)
chr3 (74-209)||(40665331-40665465)
chr3 (129-214)||(30574002-30574085)
chr3 (129-216)||(49465751-49465838)
chr3 (132-205)||(9279417-9279489)
chr3 (71-176)||(44061054-44061158)
chr3 (74-158)||(1816536-1816619)
chr3 (160-212)||(12833883-12833935)
chr3 (62-209)||(35127393-35127539)
chr3 (62-116)||(2100177-2100231)
chr3 (2-32)||(20873211-20873241)
chr3 (128-172)||(2128338-2128382)
chr3 (130-182)||(23808140-23808192)
chr3 (161-209)||(29520608-29520656)
chr3 (161-209)||(31365402-31365450)
[»] chr2 (19 HSPs)
chr2 (128-207)||(39567807-39567886)
chr2 (93-190)||(4026738-4026834)
chr2 (62-106)||(32757484-32757528)
chr2 (161-209)||(41407193-41407241)
chr2 (71-205)||(42457854-42457987)
chr2 (87-172)||(5998753-5998833)
chr2 (71-148)||(36863656-36863732)
chr2 (73-173)||(5133710-5133809)
chr2 (62-173)||(10143110-10143220)
chr2 (126-173)||(18962123-18962170)
chr2 (75-173)||(3102631-3102728)
chr2 (134-216)||(9833050-9833132)
chr2 (87-145)||(34101983-34102041)
chr2 (160-209)||(5599179-5599228)
chr2 (128-173)||(36114357-36114402)
chr2 (132-172)||(5045248-5045288)
chr2 (153-209)||(19608737-19608793)
chr2 (72-148)||(37292379-37292454)
chr2 (132-172)||(40672887-40672927)
[»] chr6 (10 HSPs)
chr6 (128-202)||(32206107-32206181)
chr6 (92-165)||(29296345-29296417)
chr6 (62-106)||(13907422-13907466)
chr6 (161-209)||(18076088-18076136)
chr6 (74-165)||(1402942-1403032)
chr6 (128-211)||(4163075-4163158)
chr6 (128-211)||(4224696-4224779)
chr6 (128-214)||(264268-264354)
chr6 (92-173)||(2514640-2514720)
chr6 (161-209)||(34430608-34430656)
[»] chr5 (16 HSPs)
chr5 (131-209)||(28776877-28776955)
chr5 (128-209)||(465856-465937)
chr5 (128-209)||(42582814-42582895)
chr5 (71-216)||(6593195-6593338)
chr5 (142-216)||(42573880-42573954)
chr5 (156-209)||(39105366-39105419)
chr5 (156-216)||(1618987-1619047)
chr5 (156-216)||(10771993-10772053)
chr5 (161-207)||(7319141-7319187)
chr5 (128-197)||(11835191-11835260)
chr5 (71-144)||(24030432-24030505)
chr5 (128-209)||(40864624-40864705)
chr5 (62-171)||(42646855-42646963)
chr5 (128-208)||(1465106-1465186)
chr5 (71-143)||(2568625-2568697)
chr5 (128-216)||(5963369-5963457)
[»] chr7 (12 HSPs)
chr7 (126-216)||(7612354-7612445)
chr7 (132-206)||(42656420-42656494)
chr7 (161-209)||(21568758-21568806)
chr7 (66-116)||(18350733-18350783)
chr7 (163-209)||(47795859-47795905)
chr7 (100-172)||(28613594-28613665)
chr7 (71-173)||(5628597-5628698)
chr7 (132-173)||(29574692-29574733)
chr7 (92-209)||(44777034-44777150)
chr7 (133-173)||(7513572-7513612)
chr7 (161-209)||(45806607-45806655)
chr7 (135-215)||(47510007-47510087)
[»] scaffold0024 (1 HSPs)
scaffold0024 (128-184)||(21365-21421)
[»] scaffold0590 (1 HSPs)
scaffold0590 (124-173)||(1157-1206)
[»] scaffold0275 (1 HSPs)
scaffold0275 (124-173)||(2769-2818)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2733430 - 2733215
Alignment:
Q  1 agtttttgataagctaattcaagtaacttataatttaatttgtggaaagagtcaaagagcgtatgacatgttcataagctctctatgatatcttatgaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2733430 agtttttgataagctaattcaagtaacttataatttaatttgtggaaagagtcaaagagcttatgacatgttcataagctctctatgatatcttatgaaa 2733331  T
Q  101 acaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2733330 acaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagtgcttatgcta 2733231  T
Q  201 taagctgcatattaag 216  Q
    ||||||||||||||||    
T  2733230 taagctgcatattaag 2733215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 17884107 - 17883973
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 170  Q
    ||||||||||||| |  ||| ||||||||||||||| ||||||||| ||||| | | ||||||||||||||||||||| | ||| |||| ||||| ||||    
T  17884107 ttcataagctctccaatatagcttatgaaaacaactgataacttatacaaaa-acaatttaactttattttatcttttgttatagaaatagcttacacat 17884009  T
Q  171 aagtgcatatcatgacaagcgcttatgctataagct 206  Q
     ||  | || ||||| |||  |||||||||||||||    
T  17884008 gagcacttaccatgataagtccttatgctataagct 17883973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 3155586 - 3155505
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||||||||||   ||| |||| |||||||||||  ||| |||||||| |||||||| | ||||||||||||    
T  3155586 tttaactttattttatcttttgctatagaaatagcttatacatacatgcttatcatgataagcgcttgtactataagctgca 3155505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 30066881 - 30066940
Alignment:
Q  156 aaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaa 215  Q
    |||| ||||||||| |||||| |||||| | ||||||||||||||||||||||| |||||    
T  30066881 aaatagcttatacacaagtgcttatcattataagcgcttatgctataagctgcaaattaa 30066940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 2987171 - 2987085
Alignment:
Q  129 ttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaa 215  Q
    ||||||||||||||| |||| |  || |||| ||||||| |||||||| |||||||| || | |||||| ||||||||||| |||||    
T  2987171 ttaactttattttattttttgttgtagaaatagcttataaataagtgcttatcatgataaacacttatgttataagctgcaaattaa 2987085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 6364128 - 6364063
Alignment:
Q  132 actttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatg 197  Q
    ||||||||||||||||| | ||| |||| |||||||||||||||| |||| ||| |||| ||||||    
T  6364128 actttattttatcttttgttatagaaatagcttatacataagtgcttatcttgataagcacttatg 6364063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 8422928 - 8422969
Alignment:
Q  132 actttattttatcttttttcataaaaattgcttatacataag 173  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  8422928 actttattttatctttttttataaaaatagcttatacataag 8422969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 28581945 - 28582017
Alignment:
Q  75 taagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatctttt 148  Q
    |||||||||||||||| ||| ||||||||||| ||||| ||| |  || ||||||| |||||||||||||||||    
T  28581945 taagctctctatgatagcttttgaaaacaactcataacatat-ctgaaaatagtttgactttattttatctttt 28582017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 26520316 - 26520404
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    ||||||||||||| ||||||| | ||| |||  | |||||||||||||| |||||||| || | ||||||||| |||| ||| ||||||    
T  26520316 tttaactttatttcatcttttgttatagaaacagtttatacataagtgcttatcatgataaacacttatgctagaagcagcaaattaag 26520404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 52326196 - 52326240
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataa 172  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||||    
T  52326196 tttaactttattttatcttttatcattaaaatagcttatacataa 52326240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 17751224 - 17751290
Alignment:
Q  143 tcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||| | ||| |||| ||||||| ||||| || |||||| ||||| |||||||||||||||||||    
T  17751224 tcttttattatagaaatagcttataaataagcgcttatcattacaagtgcttatgctataagctgca 17751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 44863056 - 44863130
Alignment:
Q  135 ttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||| ||| ||||||  |||||||| |||||| ||||||  | |||||||||||| |||| ||||||||||||||    
T  44863056 ttatcttacctttttctataaaaatagcttatgcataagcacttatcatgacaagtgcttgtgctataagctgca 44863130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 8468987 - 8468942
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttat 116  Q
    |||||||||||||||  ||| ||||||||||||||||||| |||||    
T  8468987 ttcataagctctctagaataacttatgaaaacaactaatagcttat 8468942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 49004065 - 49004138
Alignment:
Q  136 tattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||   ||| |||||||||||||||||| || |||||| | |||||| | |||||||| |||||    
T  49004065 tattttatcttttgctatagaaattgcttatacataagcgcttatcattataagcgcatgtgctataatctgca 49004138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 21731751 - 21731819
Alignment:
Q  139 tttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctg 207  Q
    ||||||||||   |||||||| |||||||| ||||  | |||||||| |||||||| ||||||||||||    
T  21731751 tttatcttttgctataaaaatagcttatacgtaagcacttatcatgataagcgcttgtgctataagctg 21731819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 27623686 - 27623642
Alignment:
Q  62 tatgacatgttcataagctctctatgatatcttatgaaaacaact 106  Q
    ||||||||| |||||||||||| | |||| |||||||||||||||    
T  27623686 tatgacatgctcataagctctccaggataacttatgaaaacaact 27623642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 56480387 - 56480284
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 170  Q
    ||||||||||||| | ||||  ||||||||||| || ||||||||| || || | | |||||||||||||| |||||| | ||  |||| |||||||| |    
T  56480387 ttcataagctctccaagatagtttatgaaaacagcttataacttatacataa-acaatttaactttattttgtcttttgttatggaaatagcttatacgt 56480289  T
Q  171 aagtg 175  Q
    |||||    
T  56480288 aagtg 56480284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 10744288 - 10744212
Alignment:
Q  131 aactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctg 207  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||  | | |||||| |||||||||||||||||||||    
T  10744288 aactttattttatcttttttcatcaaaatagcttatacattagcacttgtcatgataagcgcttatgctataagctg 10744212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 48064327 - 48064204
Alignment:
Q  92 cttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcg 191  Q
    ||||||||| ||||| ||||||||| ||||| ||||||| |||||||||||||||||   ||| |||||| || ||||| ||  |  ||||||| ||| |    
T  48064327 cttatgaaatcaacttataacttatacaaaa-atagttttactttattttatcttttgctatagaaattgtttctacattaggactaatcatgataaggg 48064229  T
Q  192 cttatgctataagctgcatattaag 216  Q
    |||||||||||||||||| ||||||    
T  48064228 cttatgctataagctgcaaattaag 48064204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 49888806 - 49888705
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 170  Q
    |||||||| |||||| |||| ||||||||||||||||||| ||||| | ||| | | || ||||||||||||||||||| || | |||| ||||||||||    
T  49888806 ttcataagttctctaagatagcttatgaaaacaactaatagcttatacgaaa-acaattaaactttattttatctttttccaaagaaatagcttatacat 49888708  T
Q  171 aag 173  Q
    |||    
T  49888707 aag 49888705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 46252769 - 46252857
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    ||||||||||||||||||||| | |||||||| || ||||||| ||||||||||||||  | | ||||| |||||||||| | ||||||    
T  46252769 tttaactttattttatcttttgttataaaaatagcctatacattagtgcatatcatgattaacacttatactataagctgaaaattaag 46252857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 37842039 - 37841893
Alignment:
Q  69 tgttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatac 168  Q
    |||||||||||| || |||||| ||||||  ||||||  ||| ||||| | ||| | | ||||||||||||||||| ||| | |||  ||| ||||||||    
T  37842039 tgttcataagctgtccatgatagcttatgcgaacaacatatagcttatacgaaa-acaatttaactttattttatcatttgttataggaatagcttatac 37841941  T
Q  169 ataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    || ||| | |||||||| ||| ||||||||||| ||||||| ||||||    
T  37841940 atgagtacttatcatgataagtgcttatgctattagctgcaaattaag 37841893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 216
Target Start/End: Complemental strand, 38578544 - 38578423
Alignment:
Q  93 ttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgca-tatcatgacaagcg 191  Q
    ||||| |||||||| ||| ||||| ||||| ||| ||||||||||| ||||||||| | ||| |||| ||||||||  ||||  | |||||||| |||||    
T  38578544 ttatgtaaacaacttatagcttatacaaaa-ataatttaactttatgttatcttttgttatagaaatagcttatac--aagtttattatcatgataagcg 38578448  T
Q  192 cttatgctataagctgcatattaag 216  Q
    |||||||||||||||| | ||||||    
T  38578447 cttatgctataagctgtaaattaag 38578423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 8852841 - 8852773
Alignment:
Q  130 taactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgc 198  Q
    ||||||||||||||||||| |  ||||||| |||||||||| ||||  |||||||| ||||||||||||    
T  8852841 taactttattttatcttttgttgtaaaaatagcttatacattagtgtttatcatgataagcgcttatgc 8852773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 38247393 - 38247345
Alignment:
Q  161 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  38247393 gcttatacataagtgcatatcatgataagtgcttgtgctataagctgca 38247345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 14331729 - 14331684
Alignment:
Q  161 gcttatacataagtgcatatcatgacaagcgcttatgctataagct 206  Q
    |||||||||||||||| |||||||| |||||||| |||||||||||    
T  14331729 gcttatacataagtgcttatcatgagaagcgcttgtgctataagct 14331684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 4549849 - 4549761
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    ||||||||||||||||||||| | ||| |||| |||| ||||||||    |||| ||  ||||| ||||||||||||||||| ||||||    
T  4549849 tttaactttattttatcttttgttatagaaatagcttgtacataagcatttatcgtgctaagcgtttatgctataagctgcaaattaag 4549761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 9507083 - 9507163
Alignment:
Q  124 atagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataag 204  Q
    |||||||||| |||||||| ||||| | ||| |||| |||||||||| ||||  ||| |||| |||| |||||||||||||    
T  9507083 atagtttaacattattttaacttttgttatagaaatagcttatacatgagtgtttattatgataagcacttatgctataag 9507163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 37241853 - 37241888
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaact 106  Q
    ||||||||||||||| ||||||||||||||||||||    
T  37241853 ttcataagctctctaggatatcttatgaaaacaact 37241888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 5894251 - 5894328
Alignment:
Q  129 ttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagct 206  Q
    |||||||||||||||||     |||| |||| ||||||||||||| || |||||||| |||| ||| |||||||||||    
T  5894251 ttaactttattttatctgccaccatagaaatagcttatacataagcgcttatcatgataagcacttgtgctataagct 5894328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 23544731 - 23544784
Alignment:
Q  132 actttattttatcttttttcataaaaattgcttatacataagtgcatatcatga 185  Q
    |||| ||||||||||||| |||| |||| ||||||||||||| || ||||||||    
T  23544731 acttaattttatctttttccatagaaatagcttatacataagcgcttatcatga 23544784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 42556665 - 42556760
Alignment:
Q  74 ataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 170  Q
    |||| ||||| |||||| ||||||||||||||| ||| |||||  ||||  |||||| | ||||||| ||||||| ||||| ||||  |||||||||    
T  42556665 ataaactctccatgatagcttatgaaaacaacttatagcttatataaaa-gtagtttgattttatttcatcttttgtcatagaaataacttatacat 42556760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 26215483 - 26215400
Alignment:
Q  124 atagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctg 207  Q
    ||||||||||||||||||||||||| | ||| |||| ||||||||||||| || |||||| | |||||||  ||||||||||||    
T  26215483 atagtttaactttattttatcttttgttatagaaatagcttatacataagcgcttatcattataagcgctcgtgctataagctg 26215400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 3936832 - 3936758
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctata 202  Q
    |||| |||||||||||| ||| | ||| |||| | |||||||||||||| |||||||| ||||||||||| ||||    
T  3936832 tttagctttattttatcctttgttatagaaatagattatacataagtgcctatcatgataagcgcttatgatata 3936758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 37444502 - 37444583
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||| |||||||||| | |||  ||| ||||||||||||| || |||||||| ||| ||||||||| ||| |||||    
T  37444502 tttaactttactttatcttttgttatagtaatagcttatacataagcgcttatcatgataagtgcttatgctttaacctgca 37444583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 41475147 - 41475208
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaag 189  Q
    ||||||| |||||||||||||   |||||| | |||||||||||||||| ||||||||||||    
T  41475147 tttaactgtattttatcttttgctataaaattagcttatacataagtgcttatcatgacaag 41475208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 14956425 - 14956473
Alignment:
Q  161 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||||| |||||||| ||||| || ||||||||||||||    
T  14956425 gcttatacataagtgcttatcatgataagcgattgtgctataagctgca 14956473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 34236148 - 34236064
Alignment:
Q  126 agtttaactttattttatcttttt-tcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||||||||||||| |  || ||||||||||| |||||| || |||||||| || || || || |||||||||||    
T  34236148 agtttaactttattttatctttttgttgtagaaattgcttatccataagggcttatcatgataaccgtttgtgttataagctgca 34236064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 4558835 - 4558737
Alignment:
Q  73 cataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataa 172  Q
    ||||||||||||| |||| |||||| ||||| || ||| | |||   ||| ||| ||||||||||||||||||||| | ||| |||| ||||||||||||    
T  4558835 cataagctctctaggatagcttatggaaacagcttatagcatatatgaaa-ataatttaactttattttatcttttattatagaaatagcttatacataa 4558737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 900749 - 900864
Alignment:
Q  92 cttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcg 191  Q
    ||||||||||||||| ||| ||||| ||||| |||  |||||||||||||||||||    | | ||||  ||| ||||||||||  |||||||| |||||    
T  900749 cttatgaaaacaacttatagcttatacaaaaaata--ttaactttattttatctttcactacacaaatgacttttacataagtgtttatcatgataagcg 900846  T
Q  192 cttatgctataagctgca 209  Q
     || ||||||||| ||||    
T  900847 tttgtgctataagatgca 900864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 2699342 - 2699269
Alignment:
Q  74 ataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatctttt 148  Q
    ||||||||||||||| | ||||| |||||  ||||||||||||   ||| |||||||||||||||||||| ||||    
T  2699342 ataagctctctatgacaacttataaaaacggctaataacttatatgaaa-atagtttaactttattttatatttt 2699269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 8216853 - 8216787
Alignment:
Q  138 ttttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataag 204  Q
    ||||||||||| | ||| |||| |||||||||||||||  |||||||| ||| | ||||||||||||    
T  8216853 ttttatcttttgttatataaatggcttatacataagtgtttatcatgataagtgtttatgctataag 8216787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 16210975 - 16211049
Alignment:
Q  130 taactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataag 204  Q
    ||||||||||||||| |||   ||| |||| |||||||||| ||||| |||||||| ||| |||| |||||||||    
T  16210975 taactttattttatcatttactatagaaatagcttatacatgagtgcgtatcatgataagtgcttgtgctataag 16211049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 27728062 - 27728139
Alignment:
Q  81 ctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaat 159  Q
    ||||| |||| |||||||||||||||||||  ||||   ||| ||||||| ||||||||||||||||||| ||| ||||    
T  27728062 ctctaggatagcttatgaaaacaactaatactttatatgaaa-atagtttgactttattttatctttttttatagaaat 27728139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 35453707 - 35453784
Alignment:
Q  125 tagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataa 203  Q
    |||||||||||||||||||||||| |  || |||  | ||||| |||||| | ||| ||||||||||||||||||||||    
T  35453707 tagtttaactttattttatcttttgttgtagaaacagattatatataagtacttat-atgacaagcgcttatgctataa 35453784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 40859831 - 40859885
Alignment:
Q  154 aaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgc 208  Q
    |||||| ||||||||||||| || |||||||| |||| ||| |||||||||||||    
T  40859831 aaaaatagcttatacataagcgcttatcatgataagcacttgtgctataagctgc 40859885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 8407393 - 8407336
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatga 185  Q
    |||||||||||||||||||||  |||| ||||  ||||||| |||| |||||||||||    
T  8407393 tttaactttattttatcttttggcatagaaatgacttatacgtaagcgcatatcatga 8407336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 31315536 - 31315581
Alignment:
Q  124 atagtttaactttattttatcttttttcataaaaattgcttataca 169  Q
    ||||||| ||||||||||||||||| | |||||||| |||||||||    
T  31315536 atagtttgactttattttatcttttattataaaaatagcttataca 31315581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 31862532 - 31862456
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatctttt 148  Q
    ||||||||||||||| |||| |||||||||||| || ||| ||||| | | | ||||||| ||||||| |||||||||    
T  31862532 ttcataagctctctaggataacttatgaaaacatcttatagcttatacgaga-atagtttgactttatattatctttt 31862456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 40637422 - 40637471
Alignment:
Q  160 tgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||| |||||||| ||| |||| |||| ||||||||||||||||||    
T  40637422 tgcttataaataagtgcttattatgataagcacttatgctataagctgca 40637471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 40665465 - 40665331
Alignment:
Q  74 ataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataag 173  Q
    |||||||||| | |||| |||||||||||| || ||||||||  ||||| ||| ||| | |||| |||||||| | | |||||||| |||| |||| |||    
T  40665465 ataagctctccaagataacttatgaaaacatcttataacttacacaaaa-ataattttattttagtttatcttctattataaaaatagcttgtacagaag 40665367  T
Q  174 tgcatatcatgacaagcgcttatgctataagctgca 209  Q
    ||| |||||||| |||  ||||||||||||||||||    
T  40665366 tgcttatcatgataagaacttatgctataagctgca 40665331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 30574002 - 30574085
Alignment:
Q  129 ttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatatta 214  Q
    |||||||||||||||||||||  ||| |||| ||||||||||||| || |||||||| ||  ||||||| ||||||||||| ||||    
T  30574002 ttaactttattttatcttttt--atagaaatagcttatacataagcgcttatcatgataaatgcttatgatataagctgcaaatta 30574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 49465751 - 49465838
Alignment:
Q  129 ttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    |||||||||||||||||||| | |||||||| ||||| ||||||| |  | |||||| ||| | ||||||||||| ||||| ||||||    
T  49465751 ttaactttattttatcttttgttataaaaatagcttacacataagcgtttctcatgataagtgattatgctataaactgcaaattaag 49465838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 9279417 - 9279489
Alignment:
Q  132 actttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagc 205  Q
    |||||||| |||||||||||  ||||||  ||||||||||| ||| ||| |||| |||||||||||||||||||    
T  9279417 actttattgtatcttttttcgaaaaaataacttatacataaatgcttat-atgataagcgcttatgctataagc 9279489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 44061054 - 44061158
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 170  Q
    |||||||| |||||| |||||| ||||||||||||| ||| |||||  |||| | | |||||| ||||||||||||||   ||| |||| |||||||||     
T  44061054 ttcataagttctctaagatatcatatgaaaacaacttatagcttatagaaaa-acaatttaaccttattttatcttttgctatagaaatagcttatacag 44061152  T
Q  171 aagtgc 176  Q
    ||||||    
T  44061153 aagtgc 44061158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 1816619 - 1816536
Alignment:
Q  74 ataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaa 158  Q
    |||||||||| |  ||| ||||||||||||||| ||| ||||| ||||| | ||||| ||||||||||||||||| | |||||||    
T  1816619 ataagctctccagtatagcttatgaaaacaacttatatcttatacaaaa-acagtttgactttattttatcttttattataaaaa 1816536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 12833935 - 12833883
Alignment:
Q  160 tgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatat 212  Q
    |||||||| |||||||| ||| |||| |||| |||||||||||||||||||||    
T  12833935 tgcttataaataagtgcttattatgataagcacttatgctataagctgcatat 12833883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 209
Target Start/End: Original strand, 35127393 - 35127539
Alignment:
Q  62 tatgacatgttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattg 161  Q
    ||||||||||| |||||||||| | ||||   |||||||| |  | ||| | ||||||||| | | |||||||||| | |||||||| | ||| |||| |    
T  35127393 tatgacatgtttataagctctccaagatagtgtatgaaaatagtttatagcatatgcaaaa-acaatttaactttagtatatcttttgttatagaaatag 35127491  T
Q  162 cttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    | ||||||||||  | |||||||| ||| ||||||| |||||||||||    
T  35127492 cctatacataagcacttatcatgataagagcttatggtataagctgca 35127539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 2100177 - 2100231
Alignment:
Q  62 tatgacatgttcataagctctctatgatatcttatgaaaacaactaataacttat 116  Q
    |||||||||||| ||||||||| | |||| ||||||||||||||| ||| |||||    
T  2100177 tatgacatgttcctaagctctccaagataacttatgaaaacaacttatagcttat 2100231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 20873241 - 20873211
Alignment:
Q  2 gtttttgataagctaattcaagtaacttata 32  Q
    |||||||||||||||||||||||||||||||    
T  20873241 gtttttgataagctaattcaagtaacttata 20873211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 2128338 - 2128382
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataa 172  Q
    ||||||||||||||||||||| | ||| |||| ||||||||||||    
T  2128338 tttaactttattttatcttttgttatagaaatagcttatacataa 2128382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 23808140 - 23808192
Alignment:
Q  130 taactttattttatcttttttcataaaaattgcttatacataagtgcatatca 182  Q
    ||||||||||||| || || | |||||||| |||||||||||||||| |||||    
T  23808140 taactttattttacctattgttataaaaatagcttatacataagtgcctatca 23808192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 29520608 - 29520656
Alignment:
Q  161 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||||| ||| |||| ||| | |||||||||||||||||    
T  29520608 gcttatacataagtgcttattatgataagtgtttatgctataagctgca 29520656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 31365402 - 31365450
Alignment:
Q  161 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||||| |||||||| || | ||| ||||||||||||||    
T  31365402 gcttatacataagtgcttatcatgataatcacttgtgctataagctgca 31365450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 39567886 - 39567807
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctg 207  Q
    ||||||||||||||||||||| | ||| ||||  |||||||| |||||| |||||||| |||||||||||| ||||||||    
T  39567886 tttaactttattttatcttttgttatagaaatatcttatacacaagtgcttatcatgataagcgcttatgcaataagctg 39567807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 4026834 - 4026738
Alignment:
Q  93 ttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagc 190  Q
    ||||||||||| || |||| |||||||||| ||| |||||||||||||||||||||   |||||||| ||||||| |||||  | |||||||| ||||    
T  4026834 ttatgaaaacagcttataatttatgcaaaa-ataatttaactttattttatcttttgctataaaaatagcttatagataagcacttatcatgataagc 4026738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 32757484 - 32757528
Alignment:
Q  62 tatgacatgttcataagctctctatgatatcttatgaaaacaact 106  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||    
T  32757484 tatgacatgtccataagctctccatgatatcttatgaaaacaact 32757528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 41407241 - 41407193
Alignment:
Q  161 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||||||    
T  41407241 gcttatacataagtgcttatcatgataagcgcttgtgctataagctgca 41407193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 42457987 - 42457854
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 170  Q
    |||||| | |||||| |||| |||||||| ||| |||| | ||||  ||||| | | |||||||||||||||||||||   ||| |||| | ||||||||    
T  42457987 ttcatatgttctctaagatagcttatgaatacagctaagagcttaaacaaaa-acaatttaactttattttatcttttactatagaaatagattatacat 42457889  T
Q  171 aagtgcatatcatgacaagcgcttatgctataagc 205  Q
    || ||| |||||||| | |||||| ||||||||||    
T  42457888 aaatgcttatcatgataggcgcttgtgctataagc 42457854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 5998753 - 5998833
Alignment:
Q  87 gatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataa 172  Q
    |||| ||| ||||||||||| |||||||||| ||     ||||||||||||||||||||||| | |||||||| ||||||| ||||    
T  5998753 gatagcttgtgaaaacaacttataacttatgaaa-----agtttaactttattttatcttttgttataaaaatagcttatatataa 5998833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 36863656 - 36863732
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatctttt 148  Q
    ||||||||||||| | |||| ||||||||||||| | |||||||||  |||| || |||| |||||||||||||||||    
T  36863656 ttcataagctctccaagatagcttatgaaaacaatttataacttatataaaa-attgtttgactttattttatctttt 36863732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 5133809 - 5133710
Alignment:
Q  73 cataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataa 172  Q
    ||||||||||||  |||| ||| |||||||| || ||| |||||  |||| | |||||| |||||||||||||||| | ||| |||| ||||||||||||    
T  5133809 cataagctctcttagataacttttgaaaacagcttatatcttatataaaa-acagtttatctttattttatcttttgttatagaaatagcttatacataa 5133711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 10143220 - 10143110
Alignment:
Q  62 tatgacatgttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattg 161  Q
    |||||||| | ||||| ||||| |||||| |||||||||| |||| ||| |||||  |||| | ||||| |||| |||||||||||| | ||| ||||      
T  10143220 tatgacatatccataaactctccatgatagcttatgaaaaaaacttatagcttatataaaa-acagtttgacttaattttatcttttgttatagaaataa 10143122  T
Q  162 cttatacataag 173  Q
    ||||||||||||    
T  10143121 cttatacataag 10143110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 18962123 - 18962170
Alignment:
Q  126 agtttaactttattttatcttttttcataaaaattgcttatacataag 173  Q
    ||||||||||||||||||||||| | |||||||| ||| |||||||||    
T  18962123 agtttaactttattttatcttttgttataaaaatagctaatacataag 18962170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 3102728 - 3102631
Alignment:
Q  75 taagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataag 173  Q
    |||| |||| ||||||  ||||||||||| ||||||  ||||  |||| ||||||| |||||||||||| ||||   |||||||| |||||||||||||    
T  3102728 taagttctccatgataaattatgaaaacagctaatagattatataaaa-atagtttgactttattttatattttgctataaaaatagcttatacataag 3102631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 9833132 - 9833050
Alignment:
Q  134 tttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    ||||||||||||||| | ||  |||| | |||||||||||||  |||||||| ||  ||||||||||||||||| | ||||||    
T  9833132 tttattttatcttttgttatggaaatagattatacataagtgtttatcatgataaatgcttatgctataagctgtaaattaag 9833050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 34102041 - 34101983
Alignment:
Q  87 gatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatct 145  Q
    |||| ||||| ||||||||||||||||||| ||||| |  |||| ||||||||||||||    
T  34102041 gatagcttataaaaacaactaataacttatacaaaaaaacgtttgactttattttatct 34101983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 5599179 - 5599228
Alignment:
Q  160 tgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||| |||||||| ||| |||| |||| ||||||||||||||||||    
T  5599179 tgcttataaataagtgcttattatgataagcacttatgctataagctgca 5599228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 36114402 - 36114357
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataag 173  Q
    ||||||||||||||||||||| |||||||||| ||| ||| |||||    
T  36114402 tttaactttattttatcttttgtcataaaaatagctaatatataag 36114357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 5045248 - 5045288
Alignment:
Q  132 actttattttatcttttttcataaaaattgcttatacataa 172  Q
    ||||||||||||||||| | |||||||| ||||||||||||    
T  5045248 actttattttatcttttgttataaaaatagcttatacataa 5045288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 19608737 - 19608793
Alignment:
Q  153 taaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    ||||||| |||||||||||||||| |||||||  | | |||| ||||||||||||||    
T  19608737 taaaaatagcttatacataagtgcttatcatggtatgtgcttgtgctataagctgca 19608793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 37292379 - 37292454
Alignment:
Q  72 tcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatctttt 148  Q
    |||||| ||||| | |||| |||| |||||||||||||| |||||   ||| ||||||| |||||||||||||||||    
T  37292379 tcataaactctccaggatagcttaagaaaacaactaatagcttatatgaaa-atagttttactttattttatctttt 37292454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 40672887 - 40672927
Alignment:
Q  132 actttattttatcttttttcataaaaattgcttatacataa 172  Q
    ||||||||||||||||||||||| ||||  |||||||||||    
T  40672887 actttattttatcttttttcatagaaataacttatacataa 40672927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 32206107 - 32206181
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctata 202  Q
    ||||||||||||| ||||||| ||||| | || ||||| |||||||||| |||||||| ||||||||||||||||    
T  32206107 tttaactttatttcatcttttgtcatagagatagcttacacataagtgcttatcatgataagcgcttatgctata 32206181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 29296345 - 29296417
Alignment:
Q  92 cttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgctta 165  Q
    |||| |||||||||| ||| ||||| ||||| ||| ||||||||||||||||||||||||||| |||| |||||    
T  29296345 cttaagaaaacaacttataccttatacaaaa-ataatttaactttattttatcttttttcatagaaatcgctta 29296417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 13907466 - 13907422
Alignment:
Q  62 tatgacatgttcataagctctctatgatatcttatgaaaacaact 106  Q
    ||||||||||||||||||||| || |||| |||||||||||||||    
T  13907466 tatgacatgttcataagctctttaggatagcttatgaaaacaact 13907422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 18076136 - 18076088
Alignment:
Q  161 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||||| ||| |||| |||||||| ||||||||||||||    
T  18076136 gcttatacataagtgcttattatgataagcgcttgtgctataagctgca 18076088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 1403032 - 1402942
Alignment:
Q  74 ataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgctta 165  Q
    ||||| |||| |||||| ||||||||||||| | ||| |||||   ||| ||||||||||||||||||||||||| | ||| |||| |||||    
T  1403032 ataagatctccatgatagcttatgaaaacaatttatagcttatatgaaa-atagtttaactttattttatcttttgttatagaaatagctta 1402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 4163158 - 4163075
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcata 211  Q
    |||||||||||||||||| |||  |||||||| ||||||   ||||||  |||||||| ||| || | ||||||||||||||||    
T  4163158 tttaactttattttatctatttctataaaaatagcttatgtgtaagtgtttatcatgataagtgcctgtgctataagctgcata 4163075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 4224779 - 4224696
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcata 211  Q
    |||||||||||||||||| |||  |||||||| ||||||   ||||||  |||||||| ||| || | ||||||||||||||||    
T  4224779 tttaactttattttatctatttctataaaaatagcttatgtgtaagtgtttatcatgataagtgcctgtgctataagctgcata 4224696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 264354 - 264268
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatatta 214  Q
    |||||||||||||||||||||    || |||| ||||||| |||||  | |||||||| |||| ||| |||||||||||||| ||||    
T  264354 tttaactttattttatcttttgctttagaaatagcttatatataagcacttatcatgataagcacttgtgctataagctgcaaatta 264268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 2514720 - 2514640
Alignment:
Q  92 cttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataag 173  Q
    |||||||||| |||| ||| || ||  ||||| |||||| ||||||||||||||||| | ||| |||| |||||||||||||    
T  2514720 cttatgaaaataacttatagctcatataaaat-tagtttgactttattttatcttttattatagaaatagcttatacataag 2514640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 34430656 - 34430608
Alignment:
Q  161 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    ||||||||||||| || |||||||| |||| ||| ||||||||||||||    
T  34430656 gcttatacataagcgcctatcatgataagcacttgtgctataagctgca 34430608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 28776955 - 28776877
Alignment:
Q  131 aactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||||||||  |||||||| |||||||||||||  | |||||||| ||| ||||| |||||||||||||    
T  28776955 aactttattttatctttttcaataaaaatagcttatacataagcacttatcatgataagtgcttaggctataagctgca 28776877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 465937 - 465856
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    ||||||||||||||||||||| ||||| |||| ||||||| |||||||| |||||||| | | ||||||| ||||| |||||    
T  465937 tttaactttattttatcttttgtcatagaaatagcttatatataagtgcttatcatgaaatgagcttatgttataaactgca 465856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 42582895 - 42582814
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    ||||||||||||| ||||||| ||||  |||| ||||||||||||| || ||| |||| || ||||||||||||||||||||    
T  42582895 tttaactttatttcatcttttatcatggaaatagcttatacataagcgcttattatgataaacgcttatgctataagctgca 42582814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 6593338 - 6593195
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 170  Q
    ||||||||||||||| | || ||||| |||||| || ||| | ||| || ||||   ||||||||||||||||||||| | ||| |||||| ||||||||    
T  6593338 ttcataagctctctaaggtagcttatcaaaacagcttatagcctatacagaataa--tttaactttattttatcttttgttatagaaattgtttatacat 6593241  T
Q  171 aagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    ||| || ||||| || ||  | ||||||||||||||| | ||||||    
T  6593240 aagcgcgtatcaagataaatgattatgctataagctgtaaattaag 6593195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 42573880 - 42573954
Alignment:
Q  142 atcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    ||||||| | ||| |||| ||||||||||||| || |||||||| ||||||| | ||||||||||||| ||||||    
T  42573880 atcttttgttatagaaatagcttatacataagcgcttatcatgataagcgctcaggctataagctgcaaattaag 42573954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 39105419 - 39105366
Alignment:
Q  156 aaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||| ||||||||||||| || |||||||| |||| ||||||||||||||||||    
T  39105419 aaatagcttatacataagcgcttatcatgataagcacttatgctataagctgca 39105366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 1619047 - 1618987
Alignment:
Q  156 aaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    |||| ||||||||| |||||| |||||| | ||||||||||||||||||| ||| ||||||    
T  1619047 aaatagcttatacaaaagtgcttatcatcaaaagcgcttatgctataagcagcaaattaag 1618987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 10771993 - 10772053
Alignment:
Q  156 aaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    |||| ||||||||||| |||  |||||||| |||| |||||||||||||||||| ||||||    
T  10771993 aaatagcttatacatatgtgtttatcatgataagcacttatgctataagctgcaaattaag 10772053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 7319141 - 7319187
Alignment:
Q  161 gcttatacataagtgcatatcatgacaagcgcttatgctataagctg 207  Q
    |||||| ||||||||| |||||||| |||||||| ||||||||||||    
T  7319141 gcttatgcataagtgcttatcatgataagcgcttgtgctataagctg 7319187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 11835260 - 11835191
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatg 197  Q
    ||||||||||||||||||||| | |||||||| | ||||||||||   | |||||||| ||||| |||||    
T  11835260 tttaactttattttatcttttgttataaaaatggtttatacataaacacttatcatgataagcgtttatg 11835191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 24030432 - 24030505
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatc 144  Q
    |||||||| | ||||  ||| ||||| ||||||||| ||||| ||| ||||| ||| |||||||||||||||||    
T  24030432 ttcataagttatctaatatagcttataaaaacaacttataacatatccaaaaaataatttaactttattttatc 24030505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 40864705 - 40864624
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    ||||||||||||||||||| |   |||||||| || |||| |||||  | | |||| ||| |||||||||||||||||||||    
T  40864705 tttaactttattttatcttatgctataaaaatagcctatatataagcacttttcataacaggcgcttatgctataagctgca 40864624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 42646963 - 42646855
Alignment:
Q  62 tatgacatgttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattg 161  Q
    |||||||||||||||||||||| | |||   ||||||||||| || ||| ||||  ||||| | | |||||||| |||||||| ||| | ||||||||      
T  42646963 tatgacatgttcataagctctccaagatcgtttatgaaaacaccttatagcttaaacaaaa-acaatttaacttaattttatcctttgttataaaaatat 42646865  T
Q  162 cttatacata 171  Q
    ||||||||||    
T  42646864 cttatacata 42646855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 1465106 - 1465186
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgc 208  Q
    ||||||||||||||||| | |   ||| |||| ||||||||||||| || |||| ||| |||| |||||||||||| ||||    
T  1465106 tttaactttattttatcctatgctatagaaatagcttatacataagcgcttatcttgataagcacttatgctataaactgc 1465186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 2568697 - 2568625
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttat 143  Q
    ||||| ||||||| |||||| ||||||||||||||| ||| ||||| | ||| | | ||||||||| ||||||    
T  2568697 ttcattagctctccatgatagcttatgaaaacaacttatagcttatacgaaaaacaatttaactttgttttat 2568625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 5963369 - 5963457
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    ||||||||||||||||||||  | ||| |||| | || |||||||| || |||||||| ||  |||||||||||||  |||| ||||||    
T  5963369 tttaactttattttatctttcattatagaaatagtttgtacataagcgcttatcatgataaatgcttatgctataaattgcaaattaag 5963457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 7612445 - 7612354
Alignment:
Q  126 agtttaactttattttatcttttttca-taaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 216  Q
    |||||||||| ||| |||||||||| | | ||||| ||||||||||| | || |||||||| ||| ||||||||||||||||||| ||||||    
T  7612445 agtttaacttaattatatctttttttaattaaaatagcttatacatatgagcttatcatgataagtgcttatgctataagctgcaaattaag 7612354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 42656494 - 42656420
Alignment:
Q  132 actttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagct 206  Q
    ||||||||||||||||| | ||| |||| ||||||| |||||||| |||  ||| ||||||||||||||||||||    
T  42656494 actttattttatcttttgttatagaaatagcttatatataagtgcttattttgataagcgcttatgctataagct 42656420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 21568758 - 21568806
Alignment:
Q  161 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  21568758 gcttatacataagtgcttatcatgataagcacttatgctataagctgca 21568806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 18350733 - 18350783
Alignment:
Q  66 acatgttcataagctctctatgatatcttatgaaaacaactaataacttat 116  Q
    |||||||||||||||||| |||||| |||||||||||| || |||||||||    
T  18350733 acatgttcataagctctccatgatagcttatgaaaacagcttataacttat 18350783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 47795905 - 47795859
Alignment:
Q  163 ttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||  |||||||| |||||||||||||||||||||||    
T  47795905 ttatacataagtggttatcatgataagcgcttatgctataagctgca 47795859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 28613594 - 28613665
Alignment:
Q  100 aacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataa 172  Q
    ||||||| ||||||||| ||||| | | ||||||||| ||||||||||| | |||||||| ||||||||||||    
T  28613594 aacaacttataacttatacaaaa-acaatttaactttgttttatcttttgttataaaaatagcttatacataa 28613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 5628597 - 5628698
Alignment:
Q  71 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 170  Q
    |||||||||||||| |||||||||||||||||| || ||| ||||    ||| | |||| |||| ||||||||| ||| | |||||||| |||||| |||    
T  5628597 ttcataagctctctgtgatatcttatgaaaacagcttatatcttaaatgaaa-acagttcaactctattttatcatttgttataaaaatagcttatgcat 5628695  T
Q  171 aag 173  Q
    |||    
T  5628696 aag 5628698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 29574692 - 29574733
Alignment:
Q  132 actttattttatcttttttcataaaaattgcttatacataag 173  Q
    ||||||||| ||||||| |||||||||| |||||||||||||    
T  29574692 actttatttcatcttttgtcataaaaatagcttatacataag 29574733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 44777034 - 44777150
Alignment:
Q  92 cttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcg 191  Q
    ||||||||||||||| ||| ||| | | ||| | ||||||  |||| ||||||||||   ||| |||| | |||| ||||||||| |||||||| || |     
T  44777034 cttatgaaaacaacttatagcttgtccgaaa-acagtttatttttaatttatcttttgcaatagaaatagtttatgcataagtgcttatcatgataaaca 44777132  T
Q  192 cttatgctataagctgca 209  Q
    ||||||||||||||||||    
T  44777133 cttatgctataagctgca 44777150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 7513612 - 7513572
Alignment:
Q  133 ctttattttatcttttttcataaaaattgcttatacataag 173  Q
    |||||||||||||||| || ||||||| |||||||||||||    
T  7513612 ctttattttatcttttgtcttaaaaatagcttatacataag 7513572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 45806607 - 45806655
Alignment:
Q  161 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 209  Q
    |||||||||||||||| ||| |||| ||| |||| ||||||||||||||    
T  45806607 gcttatacataagtgcttattatgataagtgcttttgctataagctgca 45806655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 47510087 - 47510007
Alignment:
Q  135 ttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaa 215  Q
    |||||||||||| | | |||||||||||||||| |||||  | |||||||| |||| |||| || ||||||| || |||||    
T  47510087 ttattttatcttatgttataaaaattgcttatatataagcccttatcatgataagcacttaggcaataagctacaaattaa 47510007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 21365 - 21421
Alignment:
Q  128 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatg 184  Q
    |||||||||||||||||||||   |||||||| |||||||||||||||| |||||||    
T  21365 tttaactttattttatcttttcctataaaaatagcttatacataagtgcttatcatg 21421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 1157 - 1206
Alignment:
Q  124 atagtttaactttattttatcttttttcataaaaattgcttatacataag 173  Q
    ||||||| ||||||||||||||||| | ||| |||| |||||||||||||    
T  1157 atagtttgactttattttatcttttgttatagaaatagcttatacataag 1206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 2818 - 2769
Alignment:
Q  124 atagtttaactttattttatcttttttcataaaaattgcttatacataag 173  Q
    ||||||| ||||||||||||||||| | ||| |||| |||||||||||||    
T  2818 atagtttgactttattttatcttttgttatagaaatagcttatacataag 2769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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