View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_42 (Length: 249)
Name: NF1547_low_42
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 5981525 - 5981353
Alignment:
| Q |
1 |
gaatatcatgaagaggaatggaccctttcggaaaactaatattgaaaagtaatgaatggattagctagtttcatagagaatttgttctcgcgcgttttat |
100 |
Q |
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| T |
5981525 |
gaatattatgaagaggaatggaccctttcggaaaactaatattgaaaagtaatgaatggattagctagtttcatagagaatttcttctcgcgcgttttac |
5981426 |
T |
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| Q |
101 |
ttttgaactctaaaatttaa-aaaatgaagggttcctacccatattttaagtgtttagaaagtaaaatttaaa |
172 |
Q |
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| T |
5981425 |
ttttgaactctaaaatttaaaaaaatgaagggttcctgcccatattttaagtgtttagaaagtaaaatttaaa |
5981353 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 5981168 - 5981100
Alignment:
| Q |
164 |
aaatttaaaatgtcctaagacgcacaagaagtttggacgatggaaaagtaaataattccatattaatcc |
232 |
Q |
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| T |
5981168 |
aaatttaaaatgtcctaagacgcacaagaagtttggatgatggaaaagtaaataattccatgttaatcc |
5981100 |
T |
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