View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1547_low_43 (Length: 249)

Name: NF1547_low_43
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1547_low_43
NF1547_low_43
[»] chr7 (7 HSPs)
chr7 (1-215)||(20402919-20403135)
chr7 (155-215)||(29863916-29863976)
chr7 (153-215)||(24169428-24169490)
chr7 (155-215)||(28959022-28959084)
chr7 (153-214)||(2798254-2798315)
chr7 (155-214)||(31001401-31001460)
chr7 (154-215)||(27951963-27952024)
[»] chr8 (4 HSPs)
chr8 (153-215)||(4435560-4435622)
chr8 (155-215)||(21687378-21687438)
chr8 (155-215)||(21691702-21691762)
chr8 (157-214)||(1606594-1606651)
[»] chr1 (4 HSPs)
chr1 (154-215)||(6243535-6243596)
chr1 (155-214)||(432890-432949)
chr1 (155-215)||(39453346-39453406)
chr1 (155-215)||(12168888-12168948)
[»] chr3 (4 HSPs)
chr3 (160-215)||(36981137-36981192)
chr3 (160-215)||(37006576-37006631)
chr3 (155-214)||(33247298-33247357)
chr3 (154-215)||(36470141-36470202)
[»] chr2 (5 HSPs)
chr2 (153-214)||(27256907-27256968)
chr2 (153-215)||(14700054-14700116)
chr2 (154-215)||(31757713-31757774)
chr2 (157-207)||(40199500-40199550)
chr2 (163-215)||(13231015-13231067)
[»] chr4 (8 HSPs)
chr4 (155-215)||(8894226-8894286)
chr4 (154-215)||(52617957-52618018)
chr4 (153-209)||(1187451-1187507)
chr4 (154-214)||(26069069-26069129)
chr4 (153-215)||(46692851-46692912)
chr4 (154-215)||(6639356-6639417)
chr4 (156-204)||(9417951-9417999)
chr4 (155-215)||(22047136-22047196)
[»] chr6 (7 HSPs)
chr6 (155-214)||(5671749-5671808)
chr6 (154-215)||(6868863-6868924)
chr6 (155-214)||(24878406-24878465)
chr6 (162-215)||(26603622-26603675)
chr6 (156-215)||(2298287-2298346)
chr6 (155-215)||(31131276-31131336)
chr6 (151-215)||(34005890-34005954)
[»] scaffold0458 (1 HSPs)
scaffold0458 (155-215)||(10268-10328)
[»] scaffold0744 (1 HSPs)
scaffold0744 (155-206)||(1847-1898)
[»] scaffold0019 (1 HSPs)
scaffold0019 (152-215)||(117343-117406)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 20402919 - 20403135
Alignment:
Q  1 tccatcaaagtcctccttaatttgtttaatattgaccggttgatgttttattgttttctttcaaaaatacaaccattagatcatgcatgttc----acca 96  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||  || |||| ||||||||||||||||||||||||||||||    ||||    
T  20402919 tccaccaaagtcctccttaatttgtttaatattgaccggttgatgttttttt--ttcctttaaaaaatacaaccattagatcatgcatgttcgatcacca 20403016  T
Q  97 cctacttgttttaccttgcttcatcttcttccctcctcctcttcttcgtgttcatcattgataagtgctcaaaaatgatatattttttgtgttaatttag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  20403017 cctacttgttttaccttgcttcatcttcttccctcctcctcttcttcatgttcatcattgataagtgctcaaaagtgatatatttcttgtgttaatttag 20403116  T
Q  197 gcactttagtgatttgttt 215  Q
    |||||||||||||||||||    
T  20403117 gcactttagtgatttgttt 20403135  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 29863916 - 29863976
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  29863916 tgataaatgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttt 29863976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 24169490 - 24169428
Alignment:
Q  153 attgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||||| ||||||||||  ||| ||| ||||||||||||||||||||||||    
T  24169490 attgataagtgctcaaaagtgatatatttcatgtattattttaggcactttagtgatttgttt 24169428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 28959084 - 28959022
Alignment:
Q  155 tgataagtgctcaaaaa--tgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||||  |||||||||| || ||||||||||| ||||||||||||||||||    
T  28959084 tgataagtgctcaaaaaagtgatatatttcttatgttaatttagacactttagtgatttgttt 28959022  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 2798315 - 2798254
Alignment:
Q  153 attgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgtt 214  Q
    ||||||||||| |||||||| | ||||||| ||||||||| |||||| |||||||| |||||    
T  2798315 attgataagtgttcaaaaataacatattttatgtgttaatctaggcaatttagtgacttgtt 2798254  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 31001460 - 31001401
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgtt 214  Q
    |||||||||||||||| | | ||||||| ||||||||| |||||| |||||||| |||||    
T  31001460 tgataagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgtt 31001401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 27952024 - 27951963
Alignment:
Q  154 ttgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    ||||||||||||||||| ||||||| ||  ||||||| |||||| | ||| |||||||||||    
T  27952024 ttgataagtgctcaaaagtgatataattcatgtgttagtttaggaattttggtgatttgttt 27951963  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 4435622 - 4435560
Alignment:
Q  153 attgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  4435622 attgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttt 4435560  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 21687378 - 21687438
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||| ||||||||||  ||||||| |||||||| |||||||| ||||||    
T  21687378 tgataagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttt 21687438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 21691702 - 21691762
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||| ||||||||||  ||||||| |||||||| |||||||| ||||||    
T  21691702 tgataagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttt 21691762  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 1606594 - 1606651
Alignment:
Q  157 ataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgtt 214  Q
    |||||||||||||| | ||||||||  |||||||||||||||| |||||||| |||||    
T  1606594 ataagtgctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgtt 1606651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 6243535 - 6243596
Alignment:
Q  154 ttgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  6243535 ttgataagtgttcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttt 6243596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 432949 - 432890
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgtt 214  Q
    |||||||||||||||| |||||||||| || |||||||||||||| |||||||| |||||    
T  432949 tgataagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgtt 432890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 39453346 - 39453406
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||| | |||||| || |||||||||||||| | |||||||| ||||||    
T  39453346 tgataagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttt 39453406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 12168948 - 12168888
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||| | | ||||||  |||||||| |||||||  ||||||||||||||    
T  12168948 tgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttt 12168888  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 36981137 - 36981192
Alignment:
Q  160 agtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||    
T  36981137 agtgctcaaaagtgatatattttttgtgttaatttaagcattttagtgatttgttt 36981192  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 37006576 - 37006631
Alignment:
Q  160 agtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||    
T  37006576 agtgctcaaaagtgatatattttttgtgttaatttaagcattttagtgatttgttt 37006631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 33247298 - 33247357
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgtt 214  Q
    |||||||||||||||| | | ||||||| ||||||||| |||||| |||||||| |||||    
T  33247298 tgataagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgtt 33247357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 36470202 - 36470141
Alignment:
Q  154 ttgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    ||||||||||||||||| |   ||||||  ||||||||| |||||| |||||||||||||||    
T  36470202 ttgataagtgctcaaaagtaccatatttaatgtgttaatctaggcaatttagtgatttgttt 36470141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 27256907 - 27256968
Alignment:
Q  153 attgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgtt 214  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| |||||||| |||||    
T  27256907 attgataagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgtt 27256968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 14700054 - 14700116
Alignment:
Q  153 attgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||||| |||| || || |||||||| |||||||| |||||||||||||||    
T  14700054 attgataagtgctcaaaagtgatctaattcttgtgttagtttaggcattttagtgatttgttt 14700116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 31757713 - 31757774
Alignment:
Q  154 ttgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    ||||||||||||||||| ||||||||||  ||||||| |||||||| |||||||| ||||||    
T  31757713 ttgataagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttt 31757774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 40199500 - 40199550
Alignment:
Q  157 ataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtg 207  Q
    |||||||||||||| ||||||||||  ||||||| |||||||| |||||||    
T  40199500 ataagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtg 40199550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 13231067 - 13231015
Alignment:
Q  163 gctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||| ||||||| || ||||||||||||||||| ||| || ||||||||    
T  13231067 gctcaaaagtgatataattcttgtgttaatttaggcattttggtaatttgttt 13231015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 8894226 - 8894286
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||| ||||||||||  |||||||||||||||| |||||||| ||||||    
T  8894226 tgataagtgctcaaaactgatatatttcatgtgttaatttaggcattttagtgacttgttt 8894286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 52617957 - 52618018
Alignment:
Q  154 ttgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    ||||||||||||||||| |||||||  | ||||||||||||||||| |||| ||||||||||    
T  52617957 ttgataagtgctcaaaagtgatataaatcttgtgttaatttaggcattttaatgatttgttt 52618018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 1187451 - 1187507
Alignment:
Q  153 attgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgat 209  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||| ||| |||||    
T  1187451 attgataagtgctcaaaagtgatataatttttgtcttaatttaggcattttggtgat 1187507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 26069069 - 26069129
Alignment:
Q  154 ttgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgtt 214  Q
    ||||||||||||||||| | | ||||||| ||||||||| |||||| |||||||| |||||    
T  26069069 ttgataagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgtt 26069129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 46692912 - 46692851
Alignment:
Q  153 attgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||| ||| | ||||||||| ||||||||| |||||| |||||||| ||||||    
T  46692912 attgataagtgctc-aaagtaatatattttatgtgttaatctaggcattttagtgacttgttt 46692851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 6639356 - 6639417
Alignment:
Q  154 ttgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    ||||||||||||||| | | ||||||||  |||||||||||||||| ||| |||| ||||||    
T  6639356 ttgataagtgctcaagagtaatatatttcatgtgttaatttaggcattttggtgacttgttt 6639417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 9417999 - 9417951
Alignment:
Q  156 gataagtgctcaaaaatgatatattttttgtgttaatttaggcacttta 204  Q
    |||||||||| |||| ||||||||||  |||||||||||||||| ||||    
T  9417999 gataagtgcttaaaagtgatatatttcatgtgttaatttaggcatttta 9417951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 22047136 - 22047196
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||| | | ||||||  |||||||| |||||||  ||||||||||||||    
T  22047136 tgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttt 22047196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 5671808 - 5671749
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgtt 214  Q
    |||||||||||||||| |||||||||| || |||||||||||||| |||||||| |||||    
T  5671808 tgataagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgtt 5671749  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 6868924 - 6868863
Alignment:
Q  154 ttgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||| | |||| |||||||||| |  ||||||||||||||||||||||||||||||    
T  6868924 ttgataagtgttgaaaagtgatatatttctcatgttaatttaggcactttagtgatttgttt 6868863  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 24878406 - 24878465
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgtt 214  Q
    |||||||||||||||| |||||||||| || ||||| |||||||| |||||||| |||||    
T  24878406 tgataagtgctcaaaagtgatatatttcttatgttagtttaggcattttagtgacttgtt 24878465  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 26603622 - 26603675
Alignment:
Q  162 tgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    ||||||||| ||||||||||  |||||||||||||||| |||||||| ||||||    
T  26603622 tgctcaaaagtgatatatttcatgtgttaatttaggcattttagtgacttgttt 26603675  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 2298287 - 2298346
Alignment:
Q  156 gataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||| |||||| ||||||||||  ||||||| ||||| ||||||||||| ||||||    
T  2298287 gataagtgttcaaaagtgatatatttcatgtgttattttagacactttagtgacttgttt 2298346  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 31131276 - 31131336
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    ||||||||||| |||| | | ||||||| ||||||||| |||||| |||||||| ||||||    
T  31131276 tgataagtgcttaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttt 31131336  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 34005890 - 34005954
Alignment:
Q  151 tcattgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||||||| | | ||||||  |||||||| |||||||  ||||||| ||||||    
T  34005890 tcattgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt 34005954  T

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Target: scaffold0458 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 10328 - 10268
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    |||||||||||||||| | |||||| || |||||||||||||| | |||||||| ||||||    
T  10328 tgataagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttt 10268  T

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Target: scaffold0744 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 1847 - 1898
Alignment:
Q  155 tgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagt 206  Q
    |||||||||||||||| | | ||||||| |||||||||||||||| ||||||    
T  1847 tgataagtgctcaaaagtaacatattttatgtgttaatttaggcattttagt 1898  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 117406 - 117343
Alignment:
Q  152 cattgataagtgctcaaaaatgatatattttttgtgttaatttaggcactttagtgatttgttt 215  Q
    ||||||||||||||||||| | | ||||||  ||||||||| |||||| |||||||| ||||||    
T  117406 cattgataagtgctcaaaagtaacatatttcatgtgttaatctaggcaatttagtgacttgttt 117343  T

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