View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_48 (Length: 238)
Name: NF1547_low_48
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 2733548 - 2733753
Alignment:
| Q |
11 |
atgaatggaatgaaaagaattatcgctaagatagatagaatgaagagacctcaagttgagcctgaatctcctcacgctcatgaccagtagcaattggaac |
110 |
Q |
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| T |
2733548 |
atgaatggaatgaaaagaattatagctaagatagatagaatgaagagacctcaagttgagcctgaatctcctcacgctcatgaccagtagcaattggaac |
2733647 |
T |
|
| Q |
111 |
tacatcctcaaccttctttttaattccagtagtactgtcatcacctgaaacaagaaagaattaatcaaaatcacgaaacagtaaattcgaaacgagaaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2733648 |
tacatcctcaaccttctttttaattccagtagtactgtcatcacctgaaacaagaaagaattaatcaaaaacacgaaacagtaaattcgaaacgagaaat |
2733747 |
T |
|
| Q |
211 |
gcgatt |
216 |
Q |
| |
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|||||| |
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| T |
2733748 |
gcgatt |
2733753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 44414553 - 44414483
Alignment:
| Q |
58 |
acctcaagttgagcctgaatctcctcacgctcatgaccagtagcaattggaactacatcctcaaccttctt |
128 |
Q |
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| T |
44414553 |
acctcaagatcagcttgaatctcctcacgttcatgaccggtagcaattggaactacatcctcaaccgtctt |
44414483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 19932814 - 19932765
Alignment:
| Q |
73 |
tgaatctcctcacgctcatgaccagtagcaattggaactacatcctcaac |
122 |
Q |
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| T |
19932814 |
tgaatcttctcacgttcatgaccagtagcaattgtaactacatcctcaac |
19932765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 19922990 - 19922945
Alignment:
| Q |
73 |
tgaatctcctcacgctcatgaccagtagcaattggaactacatcct |
118 |
Q |
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||||||| |||||| |||||||| |||||||||| ||||||||||| |
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| T |
19922990 |
tgaatcttctcacgttcatgaccggtagcaattgtaactacatcct |
19922945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 19925740 - 19925695
Alignment:
| Q |
73 |
tgaatctcctcacgctcatgaccagtagcaattggaactacatcct |
118 |
Q |
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||||||| |||||| |||||||| |||||||||| ||||||||||| |
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| T |
19925740 |
tgaatcttctcacgttcatgaccggtagcaattgtaactacatcct |
19925695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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