View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_59 (Length: 222)
Name: NF1547_low_59
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_59 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 8544689 - 8544474
Alignment:
| Q |
7 |
cttcttttccatcaagtccaaacattttgttgcttgaattaaattgtgggtttttgtgcaggaccttaaaataccattgtagatagggagaagtcgatag |
106 |
Q |
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| T |
8544689 |
cttcttttccatcaagtccaaacattttgttgcttgaattaaattgtgggttttagtgcaggaccttaaaataccattgtagatagggagaagtggatag |
8544590 |
T |
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| Q |
107 |
aattgcggagtttcggcaagaaaatccatgatgctgaaagcctcttccttgtaaacccctttactcagagctcgcatgataagagaggagcatttgttat |
206 |
Q |
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| T |
8544589 |
aattgcggagtttcggaaagaaaatccatgatgctgaaagcctctttcttgtaaacccctttactcagagctcgcatgataagagaggagcatttgttat |
8544490 |
T |
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| Q |
207 |
ttatgatcatttgttt |
222 |
Q |
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| T |
8544489 |
ttatggtaatttgttt |
8544474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 8609928 - 8609713
Alignment:
| Q |
7 |
cttcttttccatcaagtccaaacattttgttgcttgaattaaattgtgggtttttgtgcaggaccttaaaataccattgtagatagggagaagtcgatag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8609928 |
cttcttttccatcaagtccaaacattttgttgcttgaattaaattgtgggttttagtgcaggaccttaaaataccattgtagatagggagaagtggatag |
8609829 |
T |
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| Q |
107 |
aattgcggagtttcggcaagaaaatccatgatgctgaaagcctcttccttgtaaacccctttactcagagctcgcatgataagagaggagcatttgttat |
206 |
Q |
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| T |
8609828 |
aattgcggagtttcggaaagaaaatccatgatgctgaaagcctctttcttgtaaacccctttactcagagctcgcatgataagagaggagcatttgttat |
8609729 |
T |
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| Q |
207 |
ttatgatcatttgttt |
222 |
Q |
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| T |
8609728 |
ttatggtaatttgttt |
8609713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 25015566 - 25015436
Alignment:
| Q |
11 |
ttttccatcaagtccaaacattttgttgcttgaattaaattgtgggtttttgtgcaggaccttaaaataccattgtagatagggagaagtcgatagaatt |
110 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||| ||| ||| |||| ||||||||||||||| |||||| | ||||||| | ||||||| | |
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| T |
25015566 |
ttttccatcaagtccaaacattttcttgcttgaactaaattctggatttctgtgtaggaccttaaaatactattgtacagtgggagaactggatagaaat |
25015467 |
T |
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| Q |
111 |
gcggagtttcggcaagaaaatccatgatgct |
141 |
Q |
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| T |
25015466 |
gccgactttctgcaagaaaatccatgatgct |
25015436 |
T |
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