View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1547_low_7 (Length: 472)
Name: NF1547_low_7
Description: NF1547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1547_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 452
Target Start/End: Complemental strand, 6157415 - 6156976
Alignment:
| Q |
13 |
attatacttttggtcattatttaagttacaaacgtcacacactttgctatattttgttgcatttgcagcttgttgcagtgaaacagttaaatcctaatgg |
112 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6157415 |
attatacttttggtcatt---taaattacaaacgtcacacactttgctatattttgttgcatttgcagcttgttgcagtgaaacggttaaatcctaatgg |
6157319 |
T |
|
| Q |
113 |
tggtcaaggttgtcaggaatttctgaccgaggttcttatgctatgcgtgttgcgtcattccaattatcttgttaagttaattggctattgcacaaatata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6157318 |
tggtcaaggttgtcaggaatttctgaccgaggttcttatgctatgcgtgttgcgtcattccaattatcttgttaagttaattggctattgcacaagtata |
6157219 |
T |
|
| Q |
213 |
gatcaaaagcttttggtttatgaatacatgcctaagggatgtcttgaagatcatctttttggtaatcttttgc-ttgtttatttatttctctcatgccac |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
6157218 |
gatcaaaagcttttggtttatgaatacatgcctaagggatgtcttgaagatcatctttttggtaatcttttgctttgtttatttattactctcatgccac |
6157119 |
T |
|
| Q |
312 |
cacttaatagtttagttatg--atgcagctgaaggtttttcatctttgttttatgataacaaatttatctagtgtttaaacacctatgttcatttatctt |
409 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6157118 |
cacttaatagtatagttatgatatgcagctgaaggtttttcatctttgttttatgataacaaatttatctagtgtttaaacacctatgttcatttatctt |
6157019 |
T |
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| Q |
410 |
agtctcgtannnnnnnnaactctacctatacatcatatgtttt |
452 |
Q |
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| T |
6157018 |
agtctcgtattttttttaactctacctatacatcacatgtttt |
6156976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 76 - 273
Target Start/End: Complemental strand, 56021111 - 56020917
Alignment:
| Q |
76 |
tgcagcttgttgcagtgaaacagttaaatcctaatggtggtcaaggttgtcaggaatttctgaccgaggttcttatgctatgcgtgttgcgtcattccaa |
175 |
Q |
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|||||||||||||||| ||||||||||||||| ||||| ||||||| ||||| |||||| |||| ||| || ||| ||| | ||| |||||||| | |
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| T |
56021111 |
tgcagcttgttgcagtaaaacagttaaatcctgatggttgtcaaggctgtcacgaatttatgacagagcttgatattctaagtgtgctgcgtcatgc--- |
56021015 |
T |
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| Q |
176 |
ttatcttgttaagttaattggctattgcacaaatatagatcaaaagcttttggtttatgaatacatgcctaagggatgtcttgaagatcatctttttg |
273 |
Q |
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| T |
56021014 |
taatcttgttaagttaattggttattgcaccaatggagatcaaatgcttttggtttatgaatacatgcctaagggatctcttgaagctcatctttttg |
56020917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 74 - 283
Target Start/End: Complemental strand, 54033450 - 54033244
Alignment:
| Q |
74 |
tttgcagcttgttgcagtgaaacagttaaatcctaatggtggtcaaggttgtcaggaatttctgaccgaggttcttatgctatgcgtgttgcgtcattcc |
173 |
Q |
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||||||||||||||| |||||||| |||| || | ||||| ||||||||| |||||||||| |||| |||||||||||| || || || | | |||||| |
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| T |
54033450 |
tttgcagcttgttgctgtgaaacaattaagtcatgatggtcgtcaaggttttcaggaatttgtgactgaggttcttatgttaagcttgctacatcattct |
54033351 |
T |
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| Q |
174 |
aattatcttgttaagttaattggctattgcacaaatatagatcaaaagcttttggtttatgaatacatgcctaagggatgtcttgaagatcatctttttg |
273 |
Q |
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||| || ||||||||||||||||| ||||| || |||||||| ||||||||||||||| |||||||||| ||||| ||| |||||||||||||||| |
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| T |
54033350 |
aat---ctggttaagttaattggctactgcactgatggagatcaaaggcttttggtttatgagtacatgcctatgggatctctcgaagatcatctttttg |
54033254 |
T |
|
| Q |
274 |
gtaatctttt |
283 |
Q |
| |
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|||| ||||| |
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| T |
54033253 |
gtaacctttt |
54033244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 54033190 - 54033134
Alignment:
| Q |
324 |
tagttatgatgcagctgaaggtttttcatctttgttttatgataacaaatttatctag |
381 |
Q |
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|||||||||| |||||||||| |||||||||||| ||||||| || |||||||||||| |
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| T |
54033190 |
tagttatgatacagctgaaggcttttcatctttg-tttatgacaataaatttatctag |
54033134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 28342080 - 28342031
Alignment:
| Q |
228 |
gtttatgaatacatgcctaagggatgtcttgaagatcatctttttggtaa |
277 |
Q |
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|||||||||||||||||||| ||| ||||||| ||||||| |||||||| |
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| T |
28342080 |
gtttatgaatacatgcctaatggaagtcttgattatcatctatttggtaa |
28342031 |
T |
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