View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548-INSERTION-2 (Length: 460)
Name: NF1548-INSERTION-2
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548-INSERTION-2 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 460
Target Start/End: Complemental strand, 12830452 - 12830000
Alignment:
| Q |
8 |
ttacccgggttggaacacggtctaacaacatcttccacgagagagccaccacttttgacggcgccatgcttttccacaattgatgaaacactcacttctc |
107 |
Q |
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| T |
12830452 |
ttacccgggttggaacacggtctaacaacatcttccacgagagagccaccacttttgacggcgccatgcttttccacaattgatgaaacactcacttctc |
12830353 |
T |
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| Q |
108 |
ctccgccccccaagaattctccaatataaacattgtttccaatttcttatacatggacttctctgtaaacaaaccctcctcttccggcttccacacccat |
207 |
Q |
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| T |
12830352 |
ctccgccccccaagaattctccaatataaacattgtttccactttcttatacatggacttctctgtaaacaaaccctcctcttccggcttccacacccat |
12830253 |
T |
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| Q |
208 |
ccgtcttggtcactattccacccatggccctccaaatcatccaaaagattagctagaagttgttcctcccagacaaaaaagcgatgacgccaagagaaaa |
307 |
Q |
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| T |
12830252 |
ccgtcttggtcactattccacccatggccctccaaatcatccaaaagattagctagaagttgttcctcccagacaaaaaagcgatgacgccaagagaaaa |
12830153 |
T |
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| Q |
308 |
tccactccctcacgaaccgttccacacccaaatatccgccaccattgcctctttttggtttaacattgctaataatcttggatatttatcaccgaaggca |
407 |
Q |
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| T |
12830152 |
tccactccctcacgaaccgttccacacccaaatatccgccaccattgcctctttttggtttaacattgcgaataatcttggatatttatcacggaaggca |
12830053 |
T |
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| Q |
408 |
acaccacccctccacctacaatatcaaagcttggtattttcaccattttcgag |
460 |
Q |
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| T |
12830052 |
acaccacccctccacctacaataccaaagcttggtattttcaccattttcgag |
12830000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 32742501 - 32742545
Alignment:
| Q |
332 |
cacccaaatatccgccaccattgcctctttttggtttaacattgc |
376 |
Q |
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| T |
32742501 |
cacccaaacatccgccacctttgcctctttttggtttgacattgc |
32742545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 28 - 373
Target Start/End: Complemental strand, 6495127 - 6494782
Alignment:
| Q |
28 |
tctaacaacatcttccacgagagagccaccacttttgacggcgccatgcttttccacaattgatgaaacactcacttctcctccgccccccaagaattct |
127 |
Q |
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| T |
6495127 |
tctaacaacaacttccacgaaaaggccaccacctttgacgaagccgcgcttttccacaattgatgaaacaccctcttctcctccacaccccaagaatctt |
6495028 |
T |
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| Q |
128 |
ccaatataaacattgtttccaatttcttatacatggacttctctgtaaacaaaccctcctcttccggcttccacacccatccgtcttggtcactattcca |
227 |
Q |
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| T |
6495027 |
ctaaaatgaacaaagcttctaatttcttatacatggacttcaccgtgaacaccccgtcctcttcccgcttccaaacccacccatcattaccttccttcca |
6494928 |
T |
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| Q |
228 |
cccatggccctccaaatcatccaaaagattagctagaagttgttcctcccagacaaaaaagcgatgacgccaagagaaaatccactccctcacgaaccgt |
327 |
Q |
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| T |
6494927 |
aacatgaccctccaaatcttccaacaaatttgtgagaagttgttcctcccaaacaaaaaaccgccgacgccaagaaaacctccactccctaacaacacgt |
6494828 |
T |
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| Q |
328 |
tccacacccaaatatccgccaccattgcctctttttggtttaacat |
373 |
Q |
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| T |
6494827 |
tcaacacccaaatatccgccaccatagcttctttttgatttgacat |
6494782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 394
Target Start/End: Original strand, 44514050 - 44514184
Alignment:
| Q |
261 |
tagaagttgttcctcccagacaaaaaagcgatgacgccaagagaaaatccactccctcacga-accgttccacacccaaatatccgccaccattgcctct |
359 |
Q |
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|||||||| ||||||||| ||||||||||| ||||||||||||| ||||||||||| | | ||| || |||||||||| ||||| ||| ||||||| |
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| T |
44514050 |
tagaagttcttcctcccaaacaaaaaagcggcgacgccaagagaatctccactccctctctacaccattagacacccaaatctccgctaccgttgcctcc |
44514149 |
T |
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| Q |
360 |
ttttggtttaacattgctaataatcttggatattt |
394 |
Q |
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| T |
44514150 |
ttttggttagacatagcaaataatctcggaaattt |
44514184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 44513828 - 44513954
Alignment:
| Q |
39 |
cttccacgagagagccaccacttttgacggcgccatgcttttccacaattgatgaaacactcacttctcctccgccccccaagaattctccaatataaac |
138 |
Q |
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| T |
44513828 |
cttccacgagagcgctaccactttagagggagccgggctttttcaaaggtgattaaacactctcaactcctccctcccccaattattctccaagattaac |
44513927 |
T |
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| Q |
139 |
attgtttccaatttcttatacatggac |
165 |
Q |
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| T |
44513928 |
atagtttccaatttcttgtacatggac |
44513954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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