View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1548-INSERTION-3 (Length: 285)

Name: NF1548-INSERTION-3
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1548-INSERTION-3
NF1548-INSERTION-3
[»] chr5 (8 HSPs)
chr5 (20-188)||(7161801-7161969)
chr5 (23-165)||(18593374-18593516)
chr5 (18-186)||(29087607-29087770)
chr5 (27-165)||(34378233-34378370)
chr5 (19-140)||(698488-698609)
chr5 (19-186)||(18313433-18313596)
chr5 (158-186)||(7195088-7195116)
chr5 (154-186)||(30097594-30097626)
[»] chr7 (17 HSPs)
chr7 (22-182)||(3867246-3867403)
chr7 (23-165)||(31971942-31972084)
chr7 (19-165)||(47325693-47325839)
chr7 (19-165)||(38306388-38306534)
chr7 (19-186)||(44353353-44353518)
chr7 (19-165)||(5860096-5860242)
chr7 (19-165)||(37795116-37795262)
chr7 (23-165)||(10244313-10244455)
chr7 (20-120)||(33435237-33435337)
chr7 (19-165)||(3419463-3419609)
chr7 (20-186)||(35745609-35745779)
chr7 (27-165)||(25160948-25161084)
chr7 (55-165)||(3419204-3419314)
chr7 (54-130)||(34390123-34390200)
chr7 (20-137)||(41089585-41089701)
chr7 (85-186)||(40726294-40726392)
chr7 (54-125)||(6585043-6585115)
[»] chr2 (12 HSPs)
chr2 (20-186)||(387302-387468)
chr2 (19-165)||(10524227-10524373)
chr2 (19-165)||(39338674-39338819)
chr2 (27-165)||(17116687-17116826)
chr2 (54-185)||(7460837-7460969)
chr2 (33-186)||(7874432-7874584)
chr2 (54-186)||(14106309-14106442)
chr2 (54-124)||(14405359-14405431)
chr2 (103-186)||(12343030-12343111)
chr2 (70-125)||(16952232-16952288)
chr2 (70-125)||(17022897-17022953)
chr2 (70-125)||(17060203-17060259)
[»] chr3 (16 HSPs)
chr3 (23-184)||(43012506-43012667)
chr3 (19-165)||(47235825-47235971)
chr3 (28-177)||(9583851-9583999)
chr3 (20-186)||(19176630-19176798)
chr3 (19-165)||(2392314-2392460)
chr3 (19-165)||(2394078-2394224)
chr3 (26-186)||(53248034-53248192)
chr3 (19-164)||(20611910-20612054)
chr3 (19-163)||(45163982-45164126)
chr3 (35-139)||(17551095-17551199)
chr3 (19-165)||(34475564-34475708)
chr3 (54-163)||(23328160-23328270)
chr3 (19-166)||(31483011-31483157)
chr3 (54-165)||(30352249-30352358)
chr3 (20-186)||(40023358-40023525)
chr3 (71-186)||(7105019-7105135)
[»] chr1 (16 HSPs)
chr1 (19-165)||(5459288-5459434)
chr1 (23-165)||(24449738-24449880)
chr1 (19-165)||(5389230-5389375)
chr1 (19-165)||(46692627-46692773)
chr1 (19-124)||(31585608-31585714)
chr1 (40-165)||(41920605-41920730)
chr1 (19-125)||(6764229-6764335)
chr1 (109-185)||(32882583-32882659)
chr1 (19-77)||(30685800-30685858)
chr1 (54-140)||(7857814-7857901)
chr1 (100-186)||(30685713-30685797)
chr1 (23-165)||(24684299-24684428)
chr1 (99-165)||(6804747-6804813)
chr1 (78-130)||(24659113-24659166)
chr1 (54-186)||(46814254-46814387)
chr1 (54-125)||(27031689-27031760)
[»] chr8 (18 HSPs)
chr8 (19-165)||(24995202-24995349)
chr8 (19-165)||(9519626-9519773)
chr8 (19-186)||(20138553-20138718)
chr8 (19-165)||(31207170-31207316)
chr8 (19-165)||(37986666-37986812)
chr8 (19-165)||(41893210-41893355)
chr8 (27-125)||(12898123-12898221)
chr8 (19-140)||(32066128-32066249)
chr8 (54-140)||(34388839-34388925)
chr8 (81-165)||(16457283-16457367)
chr8 (20-186)||(36630965-36631115)
chr8 (25-92)||(22773632-22773699)
chr8 (92-165)||(22773815-22773888)
chr8 (84-165)||(35821432-35821513)
chr8 (33-122)||(15821230-15821319)
chr8 (19-68)||(16457366-16457415)
chr8 (104-184)||(17656525-17656606)
chr8 (99-179)||(35816040-35816120)
[»] scaffold0343 (1 HSPs)
scaffold0343 (27-171)||(5841-5985)
[»] chr6 (3 HSPs)
chr6 (27-165)||(10541967-10542105)
chr6 (23-165)||(3117624-3117766)
chr6 (33-159)||(14663218-14663344)
[»] chr4 (13 HSPs)
chr4 (19-185)||(30167355-30167518)
chr4 (19-164)||(8255154-8255299)
chr4 (19-164)||(8268572-8268717)
chr4 (56-165)||(8705952-8706061)
chr4 (19-186)||(30964568-30964729)
chr4 (88-171)||(20464786-20464869)
chr4 (22-119)||(4305855-4305951)
chr4 (20-125)||(31050509-31050614)
chr4 (54-172)||(35341141-35341258)
chr4 (103-181)||(19311158-19311236)
chr4 (103-184)||(39420825-39420906)
chr4 (70-125)||(19673275-19673331)
chr4 (103-175)||(48098546-48098618)
[»] scaffold0068 (1 HSPs)
scaffold0068 (19-165)||(35583-35726)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 7161969 - 7161801
Alignment:
Q  20 agctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7161969 agctgcatgatcctttggtcaggtgttcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 7161870  T
Q  120 gtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggtag 188  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7161869 gtgacgttgggtggtggtggaaatcgtgtttacagtgcttgtttttgtgaaggagtctgttttaggtag 7161801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 18593374 - 18593516
Alignment:
Q  23 tgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtg 122  Q
    |||||||||||| ||| ||||| ||||||| |||||||||| |||| ||||||||||||||||||||||||| || | ||||||||| ||||||||||||    
T  18593374 tgcatgatccttcggttaggtgttcttcgaaatgtggctcaacttgggtgttggggtctgggagttttatttggaggatgttctttgtgggtgagtagtg 18593473  T
Q  123 acgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||| |||||||||||||| | ||||||||| ||||||||||||    
T  18593474 acgatgggcggtggtggataccgtgtttacagtgcttgttttt 18593516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 29087607 - 29087770
Alignment:
Q  18 gtagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgag 117  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||| |||   |||||||||||||||| |||||||||| ||| |||||| ||||||||    
T  29087607 gtagctccatgatcctttggtcaggtgctcttcg-tatgtggctcaacttagatgttggggtctgggagctttattttgagggt-ttctttaggggtgag 29087704  T
Q  118 tagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    |||||||| |||||||||||| | | ||||||||| |||||||||||| |   ||||||||||||||||    
T  29087705 tagtgacgatgggcggtggtgaataccgtgtttacagtgcttgttttttt---ggagtctgttttaggt 29087770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 34378233 - 34378370
Alignment:
Q  27 tgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgt 126  Q
    |||||||| ||| || |||||||||  ||||||||||||||| |||||||||| || |||||||||||||| ||||||||||| |||||||||||||||     
T  34378233 tgatccttcggttagatgctcttcgtaatgtggctcagcttgggtgttggggtttgagagttttattttgagggtgttctttgtgggtgagtagtgacga 34378332  T
Q  127 tgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||| |||||||||| | |||||||||  |||||||||||    
T  34378333 tggacggtggtggataccgtgtttac-atgcttgttttt 34378370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 698488 - 698609
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||||| |||||| ||| |||||||||| || ||||||||||||||| ||||||||||||| ||||||||||| || ||||||||||| ||||||||    
T  698488 tagctgcataatccttcggttaggtgctctttgaaatgtggctcagcttgggtgttggggtctgagagttttatttggagggtgttctttgtgggtgagt 698587  T
Q  119 agtgacgttgggcggtggtgga 140  Q
    ||||||| | |||| |||||||    
T  698588 agtgacgatcggcgatggtgga 698609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 18313596 - 18313433
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||||||||| || | | ||||||||||||| |||||||| || ||| || || || | | ||||||||  ||| | |||||||||   ||||||||    
T  18313596 tagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagtttgggttttaggattttggagtttttcttt-agggtgttcttcatgggtgagt 18313498  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    ||||||| || | |||| |||| ||||||||||||||| |||||||| |   ||||||||||||||||    
T  18313497 agtgacgatgagtggtgatggatatcgtgtttacggtgtttgttttttt---ggagtctgttttaggt 18313433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 7195116 - 7195088
Alignment:
Q  158 ttgtttttgtgaaggagtctgttttaggt 186  Q
    |||||||||||||||||||||||||||||    
T  7195116 ttgtttttgtgaaggagtctgttttaggt 7195088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 30097594 - 30097626
Alignment:
Q  154 gtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    ||||||||||| |||||||||||||||||||||    
T  30097594 gtgcttgttttcgtgaaggagtctgttttaggt 30097626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 3867246 - 3867403
Alignment:
Q  22 ctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||||| |||||||||||||||||||||||    
T  3867246 ctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgggtgttggagtatggaagttttattttgagggtgttctttgggggtgagtagt 3867345  T
Q  122 gacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgtttt 182  Q
    |||| ||| |||||||||| ||||||||||| |   |||||||||||||||||| ||||||    
T  3867346 gacgatggacggtggtggatatcgtgtttacag---ttgtttttgtgaaggagtttgtttt 3867403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 31972084 - 31971942
Alignment:
Q  23 tgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtg 122  Q
    |||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||||    
T  31972084 tgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttggagggtgttctttgtgggtgagtagtg 31971985  T
Q  123 acgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||| ||||||||||| || | ||||||||| ||||||||||||    
T  31971984 acgatgggcggtggttgataccgtgtttacagtgcttgttttt 31971942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 47325839 - 47325693
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||| ||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  47325839 tagctgaatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtgggtgagt 47325740  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| |||||| || |||| |  |||||||| ||||||||||||    
T  47325739 agtgacgatgggcgatgatggatactgtgtttacagtgcttgttttt 47325693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 38306388 - 38306534
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||  |||||||    
T  38306388 tagctgcatgatccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgtgagttttattttgagggtgttctttgtaggtgagt 38306487  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| |||| ||||||||| ||||||| | | || |||||||||    
T  38306488 agtgacgatgggtggtggtggatatcgtgtctgcagttcttgttttt 38306534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 44353518 - 44353353
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagtttta-ttttgatggtgttctttgggggtgag 117  Q
    |||||||||||||||| ||| ||||||||||||| ||||| | | ||||| |||||||||||||||||||||| |||||| |||||||||||  ||||||    
T  44353518 tagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgag 44353419  T
Q  118 tagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    |||||||| ||| |||||||||| | ||||||||| ||||||| |||| |   ||||||||||||||||    
T  44353418 tagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt---ggagtctgttttaggt 44353353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 5860242 - 5860096
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||||||||||||  || ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| || |||||    
T  5860242 tagctgcatgatccttcagttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttcagggtgttctttgtggatgagt 5860143  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| |||||  ||||| | | |||||| |  ||||||||||||    
T  5860142 agtgacgatgggcaatggtgaataccgtgttaatagtgcttgttttt 5860096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 37795116 - 37795262
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||||||||||||| ||| |||||||||||||  |||||||||||||| |||||||||| || |||||||||||||| ||||||||||| || | |||    
T  37795116 tagctgcatgatccttcggttaggtgctcttcgaactgtggctcagcttgggtgttggggtttgagagttttattttgagggtgttctttgtggttaagt 37795215  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||| | | |||||||||||||| | ||||||||| |||||| |||||    
T  37795216 agtaatgatgggcggtggtggataccgtgtttacagtgctttttttt 37795262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 10244313 - 10244455
Alignment:
Q  23 tgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtg 122  Q
    |||||||||||| ||| |||||||||| ||  |||||||||||||| ||||| |||||||||| ||||| || || |||| |||||| ||||||||||||    
T  10244313 tgcatgatccttcggttaggtgctctttgaattgtggctcagcttgggtgtttgggtctgggatttttagttggagggtggtctttgtgggtgagtagtg 10244412  T
Q  123 acgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||| |||||| ||||||| | | |||||||||||||| |||||    
T  10244413 acgatgggcgatggtggataccatgtttacggtgcttattttt 10244455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 33435237 - 33435337
Alignment:
Q  20 agctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 119  Q
    |||| |||||||||| |||||||||||||||||  ||||||||||||||  ||||| |||||| ||||||| |||||| |||||||||||||||||||||    
T  33435237 agctacatgatccttcggtcaggtgctcttcgaattgtggctcagcttggttgttgaggtctgagagttttcttttgagggtgttctttgggggtgagta 33435336  T
Q  120 g 120  Q
    |    
T  33435337 g 33435337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 3419609 - 3419463
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||| |||||||| ||| |||||| ||||||  ||||||| | |||| |||||||||| ||||||||||||||| | ||||||||||| | ||||||    
T  3419609 tagctgcttgatccttcggttaggtgcgcttcgaattgtggcttaacttgggtgttggggtttgggagttttattttaagggtgttctttgtgagtgagt 3419510  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| ||  |||||||||| ||| |||||||  || ||||||||    
T  3419509 agtgacgatgaacggtggtggatatcatgtttacaatgnttgttttt 3419463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 35745779 - 35745609
Alignment:
Q  20 agctgcatgatcctttggtcaggtgctcttcgatat---gtggctcagcttgtgtgttggggtctgggagttttattttgat-ggtgttctttgggggtg 115  Q
    ||||||||| || || ||| ||| ||| ||||||||   ||||||||||||| ||||||  |||||   ||||||||||||  |||||||||||||||||    
T  35745779 agctgcatgttcattcggttaggagcttttcgatatatagtggctcagcttgggtgttgaagtctgactgttttattttgagaggtgttctttgggggtg 35745680  T
Q  116 agtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    |||||||||| |||| || ||||||  | |||||||  ||| |||||| ||| |||| |||||| ||||||    
T  35745679 agtagtgacgatgggtgggggtggatgttgtgtttagtgtgtttgtttctgttaaggtgtctgtcttaggt 35745609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 25160948 - 25161084
Alignment:
Q  27 tgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgt 126  Q
    ||||||||  || |||||||||| || |||||||||| |||   |||||||||||| |||||||  ||| | ||||||||||| |||||||||||||||     
T  25160948 tgatccttcagttaggtgctcttggaaatgtggctcaacttagatgttggggtctgagagtttt--tttaaaggtgttctttgtgggtgagtagtgacga 25161045  T
Q  127 tgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    |||||| ||||||| |   |||||||  |||||||||||    
T  25161046 tgggcgttggtggatactatgtttacattgcttgttttt 25161084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 3419314 - 3419204
Alignment:
Q  55 tgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacgg 154  Q
    ||||||| | |||| |||||||||| ||||||||||||||| | |||||| |||| | ||||||||||| | ||  |||||||||| ||| |||||||      
T  3419314 tgtggcttaacttgggtgttggggtttgggagttttattttaagggtgttttttgtgagtgagtagtgatgatgaacggtggtggatatcatgtttacaa 3419215  T
Q  155 tgcttgttttt 165  Q
    |||||||||||    
T  3419214 tgcttgttttt 3419204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 34390123 - 34390200
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttga-tggtgttctttgggggtgagtagtgacgttggg 130  Q
    |||||||||| |||| ||||||  ||||||||||||||||||||  |||||||||||||| |||||||||||| ||||    
T  34390123 atgtggctcaacttgggtgttgtagtctgggagttttattttgaggggtgttctttggggatgagtagtgacgatggg 34390200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 41089701 - 41089585
Alignment:
Q  20 agctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 119  Q
    ||||||||||| ||| | | |||||||||||||  ||| |||||   || ||||| |||||||||||||||||||||| ||||||||||| |||| | ||    
T  41089701 agctgcatgattcttcgttgaggtgctcttcgaagtgtagctcaagatgggtgttagggtctgggagttttattttgagggtgttctttgcgggt-aata 41089603  T
Q  120 gtgacgttgggcggtggt 137  Q
    |||||  |||||||||||    
T  41089602 gtgacaatgggcggtggt 41089585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 40726392 - 40726294
Alignment:
Q  85 agttttattttgatggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttag 184  Q
    ||||||||||||| ||||||||||| || |||||||||| | | |||||||||||| | ||||||||| ||||||| |||| |   ||||||||||||||    
T  40726392 agttttattttgagggtgttctttgtgg-tgagtagtgatgataggcggtggtggataccgtgtttaccgtgcttgatttttt--tggagtctgttttag 40726296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 6585043 - 6585115
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttga-tggtgttctttgggggtgagtagtgacg 125  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||  |||| | ||||| ||||||||||||||    
T  6585043 atgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgagtagtgacg 6585115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 387302 - 387468
Alignment:
Q  20 agctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 119  Q
    ||||||||| || ||  |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  387302 agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgggggtgaata 387401  T
Q  120 gtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    |||||| |||||||||||| |  | ||||||||  ||||||||||||||||||||||||||||||||    
T  387402 gtgacgatgggcggtggtgaattttgtgtttacaatgcttgtttttgtgaaggagtctgttttaggt 387468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 10524227 - 10524373
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||||||| ||||||||    
T  10524227 tagctgcatgatccttcggttaggtgctcttcgatatgtggctcagcttgggtgttggggtttgggagttttatttggagggtgttctttgtgggtgagt 10524326  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||    
T  10524327 agtgacgatgggcggtggtggataccgtgtttacggtgcttgttttt 10524373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 39338819 - 39338674
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||| ||||||||| ||| |||||||||||||  |||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  39338819 tagctgaatgatccttcggttaggtgctcttcgaattgtgactcagcttgggtgttgaggtctgggagttttattttgagggtgttctttgtgggtgagt 39338720  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| |||||| ||||||| | | ||||||| ||||||||||||    
T  39338719 agtgacgatgggcgatggtggata-cttgtttacagtgcttgttttt 39338674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 17116826 - 17116687
Alignment:
Q  27 tgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagtttt-attttgatggtgttctttgggggtgagtagtgacg 125  Q
    |||||| | ||| ||||||||||||  ||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||| ||||||||| |||||    
T  17116826 tgatccatcggttaggtgctcttcgtaatgtggctcagcttgggtgttggggtctgagagtttttattttgagggtgttctttgtgggtgagtaatgacg 17116727  T
Q  126 ttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
     |||||||||||||| | ||||||||| |||||| |||||    
T  17116726 atgggcggtggtggataccgtgtttacagtgctttttttt 17116687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 7460837 - 7460969
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttga-tggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttac 152  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||  |||||||||||||| |||||||||||| || | ||| ||||| || ||||||||    
T  7460837 atgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgtttac 7460936  T
Q  153 ggtgcttgtttttgtgaaggagtctgttttagg 185  Q
     ||| |||||| ||| |||| ||| || |||||    
T  7460937 agtgtttgtttctgttaaggtgtccgtcttagg 7460969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 7874432 - 7874584
Alignment:
Q  33 tttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacgttgggc 131  Q
    |||||| ||| ||| ||||| ||||||||||||||| ||||||  |||| ||||||||||||||| || |||||||| |||||||||||||||| ||||     
T  7874432 tttggttaggagcttttcga-atgtggctcagcttgggtgttgaagtcttggagttttattttgagggatgttcttt-ggggtgagtagtgacgatgggt 7874529  T
Q  132 ggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    ||| ||||| |  |||||||| ||| |||||| ||| |||| ||| || ||||||    
T  7874530 ggttgtggatactgtgtttacagtgtttgtttctgtcaaggtgtccgtcttaggt 7874584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 14106442 - 14106309
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttac 152  Q
    ||||||||||||||| ||||||  ||||| |||||||||||||| || ||||||||||||||||||||||||| || | ||| ||||| |  ||||||||    
T  14106442 atgtggctcagcttgggtgttgaagtctgagagttttattttgaggggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttac 14106343  T
Q  153 ggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
      || |||||| ||| |||| ||| || ||||||    
T  14106342 aatgtttgtttctgttaaggtgtccgtcttaggt 14106309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 14405359 - 14405431
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttgatgg-tgttc-tttgggggtgagtagtgac 124  Q
    |||||||||  |||| ||||||  |||||||||||||||||||| || ||||| |||||||||||||||||||    
T  14405359 atgtggctcgacttgggtgttgaagtctgggagttttattttgagggatgttcttttgggggtgagtagtgac 14405431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 12343030 - 12343111
Alignment:
Q  103 ttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    ||||| ||||||||||||||||| || | |||  |||| ||||| ||||| | | | ||||| |||||||||||||||||||||    
T  12343030 ttcttggggggtgagtagtgacgatgagtggt--tggatatcgtttttacagaggtcgttttcgtgaaggagtctgttttaggt 12343111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 16952288 - 16952232
Alignment:
Q  70 gtgttggggtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacg 125  Q
    |||||| || |||||||||| |||| || || |||||||||||||||||||||||||    
T  16952288 gtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacg 16952232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 17022953 - 17022897
Alignment:
Q  70 gtgttggggtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacg 125  Q
    |||||| || |||||||||| |||| || || |||||||||||||||||||||||||    
T  17022953 gtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacg 17022897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 17060259 - 17060203
Alignment:
Q  70 gtgttggggtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacg 125  Q
    |||||| || |||||||||| |||| || || |||||||||||||||||||||||||    
T  17060259 gtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacg 17060203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 43012506 - 43012667
Alignment:
Q  23 tgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtg 122  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||||| |||||||||||| |||||||||||    
T  43012506 tgcatgatcgttcggtcaggtgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttaatttgagggtgttctttggaggtgagtagtg 43012605  T
Q  123 acgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttag 184  Q
     || ||| ||| |||||| | |||||||||  ||||||||||||||||||||||||||||||    
T  43012606 gcgatggacgggggtggataccgtgtttacaatgcttgtttttgtgaaggagtctgttttag 43012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 47235825 - 47235971
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||||||||||||| ||| ||||||||||||| |||||| |||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  47235825 tagctgcatgatccttcggttaggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcgagttttattttgagggtgttctttgtgggtgagt 47235924  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| ||| |||||||||| | ||||||||| ||||||||||||    
T  47235925 agtgacgatggacggtggtggataccgtgtttacagtgcttgttttt 47235971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 9583999 - 9583851
Alignment:
Q  28 gatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgtt 127  Q
    ||||||| ||||||| |||||||||  |||||||| ||||| || ||||||||||||||||||||||||| | ||||||||| || |||||||||||| |    
T  9583999 gatccttcggtcaggcgctcttcgaattgtggctctgcttgggttttggggtctgggagttttattttgaggatgttctttgcgg-tgagtagtgacgat 9583901  T
Q  128 gggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtct 177  Q
     |||||||||||| |||||||||||||||||||||||| |||||||||||    
T  9583900 aggcggtggtggatatcgtgtttacggtgcttgtttttttgaaggagtct 9583851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 19176630 - 19176798
Alignment:
Q  20 agctgcatgatccttt--ggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgag 117  Q
    ||||||||||||||||  ||||||||||||||||  ||||||||||||||| |||| |||||||||| |||||||||||| |||||||||| ||||||||    
T  19176630 agctgcatgatccttttcggtcaggtgctcttcgtaatgtggctcagcttgggtgtcggggtctgggtgttttattttgagggtgttctttaggggtgag 19176729  T
Q  118 tagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    |||||||| |||  ||||||||| |  |||||||| |||||||||||| |   ||||||||||||||||    
T  19176730 tagtgacgatggatggtggtggatactgtgtttactgtgcttgttttttttttggagtctgttttaggt 19176798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 2392460 - 2392314
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||||||||||||| ||| |||  |||||| | ||||||||||||||| |||||||||||| ||||||||||||||  |||||| |||| ||||||||    
T  2392460 tagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttgtaggtgttatttgtgggtgagt 2392361  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| |||||||||||||| | ||||||||| |||||| |||||    
T  2392360 agtgacgatgggcggtggtggataccgtgtttacagtgctttttttt 2392314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 2394224 - 2394078
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||||||||||||| ||| |||  |||||| | ||||||||||||||| |||||||||||| ||||||||||||||  |||||| |||| ||||||||    
T  2394224 tagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttgtaggtgttatttgtgggtgagt 2394125  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| |||||||||||||| | ||||||||| |||||| |||||    
T  2394124 agtgacgatgggcggtggtggataccgtgtttacagtgctttttttt 2394078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 53248034 - 53248192
Alignment:
Q  26 atgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagtttt-attttgatggtgttctttgggggtgagtagtgac 124  Q
    ||||||||| ||| | ||||||||||| ||||||||||| ||| ||||||||||||| ||||||| |||||||  |||||||||| ||||||||||||||    
T  53248034 atgatccttcggttatgtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagtttttattttgagagtgttctttgtgggtgagtagtgac 53248133  T
Q  125 gttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    | |||||||||||||  | ||||||||| |||||||||||| |   ||||||||||||||||    
T  53248134 gatgggcggtggtggttaccgtgtttacagtgcttgttttttt---ggagtctgttttaggt 53248192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 20611910 - 20612054
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||| ||||||||| ||| ||||||||||||| ||||| ||||||||| |||||||| ||| ||||||||||| ||| ||||||||||| ||||||||    
T  20611910 tagctgaatgatccttcggttaggtgctcttcgaaatgtgactcagcttgggtgttggg-tctaggagttttattctgagggtgttctttgtgggtgagt 20612008  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttt 164  Q
    ||||||| |||||| ||||||| |  |||||||| |||||||||||    
T  20612009 agtgacgatgggcgatggtggatactgtgtttacagtgcttgtttt 20612054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 45163982 - 45164126
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||||||||||||| ||| ||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||| |||||| ||||  ||||| |    
T  45163982 tagctgcatgatccttcggttaggtgctcttcgaaatgtggcttagcttgggtgttggggtctaggagttttattttgagggtgttatttgtaggtgatt 45164081  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttt 163  Q
    ||||||| ||||||||| || | | |||||||||  |||||||||    
T  45164082 agtgacgatgggcggtgatgaataccgtgtttacaatgcttgttt 45164126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 17551095 - 17551199
Alignment:
Q  35 tggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgttgggcggt 134  Q
    |||| ||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  |||||||||||||| ||||||||    
T  17551095 tggttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagttttattttgagggtgttctttgtcggtgagtagtgacgatgggcggt 17551194  T
Q  135 ggtgg 139  Q
    |||||    
T  17551195 ggtgg 17551199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 34475708 - 34475564
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||| ||||||||| ||| ||||||||||||| ||||| ||||||||  |||||||||| || |||||||  ||| | ||||||||||| ||||||||    
T  34475708 tagctgtatgatccttcggttaggtgctcttcgaaatgtgactcagcttaggtgttggggtatgagagtttt--tttaagggtgttctttgtgggtgagt 34475611  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| |||||||||||||| | |||||||||  |||||||||||    
T  34475610 agtgacgatgggcggtggtggataccgtgtttacattgcttgttttt 34475564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 23328270 - 23328160
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttga-tggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttac 152  Q
    ||||||||||||||| ||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| ||||| || ||| ||||    
T  23328270 atgtggctcagcttgggtgttgaagtctgggagttttattttgagtggtgttctttgggggtgagtagtgacgatgggtggttgtggatattgtgcttac 23328171  T
Q  153 ggtgcttgttt 163  Q
     ||| ||||||    
T  23328170 agtgtttgttt 23328160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 31483011 - 31483157
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||||||||||||| ||| ||||||||||||| ||||||||||||||  |||||||||| || ||||||| |||| | ||||||||||| |||| |||    
T  31483011 tagctgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttaggtgttggggtttgagagtttt-ttttaagggtgttctttgtgggttagt 31483109  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttg 166  Q
    ||||||| ||  | |||||||| | | |||||||  ||||| ||||||    
T  31483110 agtgacgatgaacagtggtggataccatgtttacattgcttttttttg 31483157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 30352358 - 30352249
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacg 153  Q
    ||||||||||||||| |||||||||||| |||||||| ||| |  ||||||||||| || |||||||||||| |||| ||||||||| | |||||||||     
T  30352358 atgtggctcagcttgggtgttggggtctcggagttttttttag--ggtgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgtttaca 30352261  T
Q  154 gtgcttgttttt 165  Q
    || |||||||||    
T  30352260 gtacttgttttt 30352249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 40023525 - 40023358
Alignment:
Q  20 agctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttga-tggtgttctttgggggtgagt 118  Q
    ||||||||| || || ||| ||| ||| ||||| ||||||||||||| | ||||||  ||||||||||||||||||||  || ||||||| ||| |||||    
T  40023525 agctgcatgttcattcggttaggagcttttcga-atgtggctcagctagggtgttgtagtctgggagttttattttgaggggcgttcttttgggatgagt 40023427  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtg-cttgtttttgtgaaggagtctgttttaggt 186  Q
    ||||||| |||  ||| ||||| | ||||||||| |||  |||||| ||| |||| |||||| ||||||    
T  40023426 agtgacgatggatggttgtggataccgtgtttacagtgttttgtttctgttaaggtgtctgtcttaggt 40023358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 7105019 - 7105135
Alignment:
Q  71 tgttggggtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtga 169  Q
    |||| ||| |||||||||||||||| | || ||||  || |||||||||||||||| |||| ||||||||| |  || ||||  |||||||||||  |||    
T  7105019 tgttagggactgggagttttattttaaggggtgtttctttggggtgagtagtgacgatgggtggtggtggatactgtttttatagtgcttgttttcttga 7105118  T
Q  170 aggagtctgttttaggt 186  Q
    || ||||||||||||||    
T  7105119 agaagtctgttttaggt 7105135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 5459288 - 5459434
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||||||||||||  || |||||||||| || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  5459288 tagctgcatgatccttcagttaggtgctctttgaaatgtggctcagcttgggtgttggggtctggaagttttattttgatggtgttctttgtgggtgagt 5459387  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| |||||||||||||| | ||||||||| ||| ||||||||    
T  5459388 agtgacgatgggcggtggtggataccgtgtttacagtgattgttttt 5459434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 24449880 - 24449738
Alignment:
Q  23 tgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtg 122  Q
    |||||||||||| ||| ||||||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||| |||||| |||| ||||||||||||    
T  24449880 tgcatgatccttcggttaggtgctcttcgaaatgcggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtg 24449781  T
Q  123 acgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||| |||||||||||||| | ||||||||| ||||||||||||    
T  24449780 acgatgggcggtggtggataccgtgtttacagtgcttgttttt 24449738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 5389375 - 5389230
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||| |||| ||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||   ||||||    
T  5389375 tagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttc-ttgtaagtgagt 5389277  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||    
T  5389276 agtgacgatgggcggtggtggataccgtgtttacggtgcttgttttt 5389230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 46692773 - 46692627
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||||| |||||  ||| | ||||||||||| ||||||||||||||| |||||||||||||| |||||||||| || ||||||||||| ||||||||    
T  46692773 tagctgcattatcctccggttaagtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtgttctttgtgggtgagt 46692674  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| ||||||||||| || ||||||||||| ||||||||||||    
T  46692673 agtgacgatgggcggtggttgatatcgtgtttacagtgcttgttttt 46692627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 31585714 - 31585608
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgtt-ggggtctgggagttttattttgatggtgttctttgggggtgag 117  Q
    |||||| ||||||||||||| ||||||||||||| |||||||| |||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||    
T  31585714 tagctgtatgatcctttggttaggtgctcttcgaaatgtggctaagcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgag 31585615  T
Q  118 tagtgac 124  Q
    |||||||    
T  31585614 tagtgac 31585608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 41920605 - 41920730
Alignment:
Q  40 aggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgttgggcggtggtgg 139  Q
    |||||||||||   ||||||||||||||| |||||||||||| ||||||||||||||| |||||| |||| ||||||||||||||| | ||||||||||     
T  41920605 aggtgctcttcatcatgtggctcagcttgggtgttggggtcttggagttttattttgagggtgttttttgtgggtgagtagtgacgataggcggtggtga 41920704  T
Q  140 aaatcgtgtttacggtgcttgttttt 165  Q
    | | |||||||||  |||||||||||    
T  41920705 ataccgtgtttacattgcttgttttt 41920730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 6764335 - 6764229
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||||||| ||||| ||| ||||||||||||| |||||||||| ||||  |  |||||||||||||||||||||| | | ||||||||| ||||||||    
T  6764335 tagctgcatggtccttcggttaggtgctcttcgaaatgtggctcaacttggatactggggtctgggagttttattttcaggatgttctttgtgggtgagt 6764236  T
Q  119 agtgacg 125  Q
    |||||||    
T  6764235 agtgacg 6764229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 32882583 - 32882659
Alignment:
Q  109 gggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttagg 185  Q
    ||||||||||||||||| |||| |||| |||| ||||||||||| ||||| ||||| ||||||||||| ||||||||    
T  32882583 gggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttagg 32882659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 30685858 - 30685800
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggg 77  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||    
T  30685858 tagctgcatgatcctttggttaggtgctccttgatatgtggctcagcttgggtgttggg 30685800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 7857814 - 7857901
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttga-tggtgttctttgggggtgagtagtgacgttgggcggtggtgga 140  Q
    ||||||||||| ||| ||||||  ||||||||||||||||||||  |||||||| ||||||||||||||| || |||| ||| |||||    
T  7857814 atgtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctatgggggtgagtagtggcgatgggtggttgtgga 7857901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 30685797 - 30685713
Alignment:
Q  100 gtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    |||||||||| ||||| ||||||| | |||||||||||||| | |||||||||  |||||||||||||   ||||||||||||||||    
T  30685797 gtgttctttgtgggtgtgtagtgaagatgggcggtggtggataccgtgtttacattgcttgtttttgt--tggagtctgttttaggt 30685713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 24684428 - 24684299
Alignment:
Q  23 tgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtg 122  Q
    |||||||||||| ||||||||||||||||| |||||||||| ||||  ||| |||||||| | ||||||              ||||||| |||||||||    
T  24684428 tgcatgatccttcggtcaggtgctcttcgaaatgtggctcaacttggatgtcggggtctgcgtgtttta-------------gtttggggttgagtagtg 24684342  T
Q  123 acgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||| |||||||||||||| ||||||||||| | | ||||||||    
T  24684341 acgatgggcggtggtggatatcgtgtttacagagtttgttttt 24684299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 6804747 - 6804813
Alignment:
Q  99 ggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||||||| ||||||| ||||||| |||||||||||||| |  || ||||| ||||||||||||    
T  6804747 ggtgttctttgtgggtgaggagtgacgatgggcggtggtggatactgtatttacagtgcttgttttt 6804813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 24659113 - 24659166
Alignment:
Q  78 gtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacgttggg 130  Q
    |||||||||||||||||||| || |||| |||||||||||||||||||| ||||    
T  24659113 gtctgggagttttattttgaggggtgttatttgggggtgagtagtgacgatggg 24659166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 46814387 - 46814254
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttac 152  Q
    ||||||||| || || ||||||  || |||||||||||||| || || |||| ||||| |||||||||||||| ||| |||| ||||| |  ||||||||    
T  46814387 atgtggctcggcgtgggtgttgaagtatgggagttttatttcgaggggtgttatttggaggtgagtagtgacgatggacggttgtggatactgtgtttac 46814288  T
Q  153 ggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
     | | |||||| ||| |||| |||||| ||||||    
T  46814287 agggtttgtttctgttaaggtgtctgtcttaggt 46814254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 27031760 - 27031689
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttga-tggtgttctttgggggtgagtagtgacg 125  Q
    ||||||||||| |||  |||||  ||||||||||||||||||||  |||||||| | ||||||||||||||||    
T  27031760 atgtggctcagtttggatgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacg 27031689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 24995349 - 24995202
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttgggg-tctgggagttttattttgatggtgttctttgggggtgag 117  Q
    |||||||||||||||| ||| ||||||||||||| || |||||||||||| ||||||||| ||| ||||||||||||||| ||||||||||| | |||||    
T  24995349 tagctgcatgatccttcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctaggagttttattttgagggtgttctttgtgcgtgag 24995250  T
Q  118 tagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    |||||||| |||||||||||||| | |||||||||  |||||||||||    
T  24995249 tagtgacgatgggcggtggtggataccgtgtttacaatgcttgttttt 24995202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 9519626 - 9519773
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttgggg-tctgggagttttattttgatggtgttctttgggggtgag 117  Q
    ||||||||||||| || ||| ||||||||||||| || |||||||||||| ||||||||| |||| |||||||||||||| ||||||||||| |||||||    
T  9519626 tagctgcatgatcattcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgag 9519725  T
Q  118 tagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    |||||||| |||||||||||||| | ||||||||| ||| || |||||    
T  9519726 tagtgacgatgggcggtggtggataccgtgtttacagtgatttttttt 9519773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 20138553 - 20138718
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagtttta-ttttgatggtgttctttgggggtgag 117  Q
    |||||||||||||||| ||| ||||||||||||| ||||| | | ||||| |||||||||||||||||||||| |||||| |||||||||||  ||||||    
T  20138553 tagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgag 20138652  T
Q  118 tagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    |||||||| ||| |||||||||| | ||||||||| ||||||| |||| |   ||||||||||||||||    
T  20138653 tagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt---ggagtctgttttaggt 20138718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 31207316 - 31207170
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||| |||| |||| ||| ||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||| ||||||||    
T  31207316 tagctgaatgacccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggagtatgggagttttattttgagggtgttctttgtgggtgagt 31207217  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| |||||| ||||||| |  |||||||| |||||| |||||    
T  31207216 agtgacgatgggcgatggtggatactgtgtttacagtgctttttttt 31207170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 37986812 - 37986666
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||| |||||||| ||| ||||||||||||| ||||||||||||||| |||||  |||||||||||||||||| || ||||||||||| ||||||||    
T  37986812 tagctgcctgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgtttcggtctgggagttttatttggagggtgttctttgtgggtgagt 37986713  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    | ||||| |||| |||||| || | |||||||||  |||||||||||    
T  37986712 aatgacgatgggtggtggtagataccgtgtttacaatgcttgttttt 37986666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 41893355 - 41893210
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||||||||||||   | |||| |||||||| ||||||||||||||| |||||| |||||||||||| |||||| | ||||||||||| ||||||||    
T  41893355 tagctgcatgatccttctat-aggtactcttcgaaatgtggctcagcttgggtgttgaggtctgggagttctattttcagggtgttctttgtgggtgagt 41893257  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||| ||| |||||||||| | ||||||||| || |||||||||    
T  41893256 agtgacgatggtcggtggtggataccgtgtttacagttcttgttttt 41893210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 12898221 - 12898123
Alignment:
Q  27 tgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacg 125  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||| ||||||||||| |||||||||||||||    
T  12898221 tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtcttagagttttattttgagggtgttctttgtgggtgagtagtgacg 12898123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 32066249 - 32066128
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||||||||| || ||| || ||||||| || |||||| |||||||| ||||||||||||| ||||||||||| || ||||||||||| | ||||||    
T  32066249 tagctgcatgatcattcggttagatgctctttgaaatgtggttcagcttgggtgttggggtctgagagttttatttggagggtgttctttgtgagtgagt 32066150  T
Q  119 agtgacgttgggcggtggtgga 140  Q
    ||||||| ||||||||||||||    
T  32066149 agtgacgatgggcggtggtgga 32066128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 34388925 - 34388839
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgttgggcggtggtgga 140  Q
    ||||||||||||||| |||||||||| || |||||||||||||| ||||||||||| ||||||||||||||| | ||||||||||||    
T  34388925 atgtggctcagcttgggtgttggggtatgagagttttattttgagggtgttctttgtgggtgagtagtgacgataggcggtggtgga 34388839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 16457367 - 16457283
Alignment:
Q  81 tgggagttttattttgatggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||||||||||||||| | |||| |||||  ||||||||||||||| ||| |||||||||| | ||||||||| ||||||||||||    
T  16457367 tgggagttttattttcagggtggtctttatgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgttttt 16457283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 36630965 - 36631115
Alignment:
Q  20 agctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 119  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||||  ||| |||||||| | ||||||              ||||||||||||||    
T  36630965 agctgcatgatccttcggtcaggtgctcttcgaaatgtggctcaacttggatgtgggggtctgcgtgtttta-------------gtttgggggtgagta 36631051  T
Q  120 gtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    || ||| |||||||||||||| | ||||||||| ||| |||||||| |   ||||||||||||||||    
T  36631052 gttacgatgggcggtggtggataccgtgtttacagtgtttgttttttt---ggagtctgttttaggt 36631115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 22773632 - 22773699
Alignment:
Q  25 catgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttat 92  Q
    ||||||||||  || ||||||||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  22773632 catgatccttctgttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgggagttttat 22773699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 22773815 - 22773888
Alignment:
Q  92 ttttgatggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    |||||| ||||||||||| ||||||||||||||| ||||| |||||||  | | |||||||  |||||||||||    
T  22773815 ttttgagggtgttctttgtgggtgagtagtgacgatgggcagtggtggttaccatgtttacaatgcttgttttt 22773888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 35821432 - 35821513
Alignment:
Q  84 gagttttattttgatggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    |||||||||||| | ||||||||||| || |||||||||| | ||||||||| | || |  |||||||| ||||||||||||    
T  35821432 gagttttattttaagggtgttctttgaggatgagtagtgatgatgggcggtgctagatactgtgtttacagtgcttgttttt 35821513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 15821319 - 15821230
Alignment:
Q  33 tttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatg-gtgttctttgggggtgagtagtg 122  Q
    |||||| ||| ||| ||||| ||||||||||||| |  |||||  |||||||||||||||||||| | ||||||||| || ||||||||||    
T  15821319 tttggttaggagcttttcga-atgtggctcagctcggatgttgaagtctgggagttttattttgaggagtgttcttttggagtgagtagtg 15821230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 16457415 - 16457366
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttg 68  Q
    ||||||||||||| | |||| |||||||||| || |||||||||||||||    
T  16457415 tagctgcatgatcttgtggttaggtgctctttgaaatgtggctcagcttg 16457366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 17656606 - 17656525
Alignment:
Q  104 tctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt-gtgaaggagtctgttttag 184  Q
    |||||||||||||||||||||  || |||||| |||| ||||| ||| | ||| | ||||||  ||||||||||||||||||    
T  17656606 tctttgggggtgagtagtgacaatgagcggtgttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttag 17656525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 35816120 - 35816040
Alignment:
Q  99 ggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgt 179  Q
    ||||||||||||||||||||||||| | |||| ||| ||||| |  ||||||||  || |||||| ||| |||| ||||||    
T  35816120 ggtgttctttgggggtgagtagtgatgatgggtggttgtggatactgtgtttacaatgtttgtttctgttaaggtgtctgt 35816040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 5841 - 5985
Alignment:
Q  27 tgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgt 126  Q
    |||||||| ||| ||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||| |||||| |||| ||||||||||||| |     
T  5841 tgatccttcggttaggtgctcttcgtaatgtggctcagcttgggtgttgggatctgggagttttattttgagggtgttttttgtgggtgagtagtgatga 5940  T
Q  127 tgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaag 171  Q
    |||| ||||||||| | | |||||||||||||||||||| |||||    
T  5941 tgggaggtggtggataccatgtttacggtgcttgtttttttgaag 5985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 10541967 - 10542105
Alignment:
Q  27 tgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgt 126  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| || ||| ||||||| |||||||||||||||     
T  10541967 tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtattctttgtgggtgagtagtgacga 10542066  T
Q  127 tgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    |||||||||||||| | ||| ||||  ||||||||||||    
T  10542067 tgggcggtggtggataccgtatttaaagtgcttgttttt 10542105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 3117624 - 3117766
Alignment:
Q  23 tgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtg 122  Q
    |||||||||||| | | | ||||||||||| |||||||||| |||| |||||||||||||||||||||||||  | ||||||||||| |||| ||||| |    
T  3117624 tgcatgatccttcgattatgtgctcttcgaaatgtggctcaacttgggtgttggggtctgggagttttatttatagggtgttctttgtgggtaagtagag 3117723  T
Q  123 acgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
    ||| || ||||||||||  | ||||||||| ||||||||||||    
T  3117724 acgatgagcggtggtggttaccgtgtttacagtgcttgttttt 3117766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 14663218 - 14663344
Alignment:
Q  33 tttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgttgggcg 132  Q
    |||||| || || ||||||| ||||||||| |||||  ||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||| ||||||    
T  14663218 tttggttagatgttcttcgaaatgtggctcggcttggatgttggggtttgggagttttattttgaggatgttctttgcgggtgagtagtgacgatgggcg 14663317  T
Q  133 gtggtggaaatcgtgtttacggtgctt 159  Q
    |||||||| || |||||||| ||||||    
T  14663318 gtggtggatattgtgtttacagtgctt 14663344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 30167518 - 30167355
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||||||| |||| ||| | | ||||||||| ||||||| || |||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  30167518 tagctgcatgacccttcggttaagcgctcttcgaaatgtggcccaacttgggtgttggggtatgggagttttattttgagggtgttctttgtgggtgagt 30167419  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttagg 185  Q
     |||||||| |||||||||||| | ||||||||| ||||||| |||| |   |||||||||||||||    
T  30167418 ggtgacgtt-ggcggtggtggataccgtgtttacagtgcttgatttttt--tggagtctgttttagg 30167355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 8255154 - 8255299
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||| |||||| |  || ||||||||||||  ||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||| ||||||||    
T  8255154 tagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagt 8255253  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttt 164  Q
    ||||||| ||||  |||||||| |  |||||||| |||||||||||    
T  8255254 agtgacgatgggatgtggtggatactgtgtttacagtgcttgtttt 8255299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 8268572 - 8268717
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||| |||||| |  || ||||||||||||  ||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||| ||||||||    
T  8268572 tagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagt 8268671  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttt 164  Q
    ||||||| ||||  |||||||| |  |||||||| |||||||||||    
T  8268672 agtgacgatgggatgtggtggatactgtgtttacagtgcttgtttt 8268717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 8706061 - 8705952
Alignment:
Q  56 gtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggt 155  Q
    ||||||||||||| ||||||||||||  |||||||||||||| ||||||||||| ||||| ||||||||| ||||| |||||||| |  |||||||| ||    
T  8706061 gtggctcagcttgggtgttggggtctaagagttttattttgagggtgttctttgtgggtgggtagtgacgatgggcagtggtggatactgtgtttacagt 8705962  T
Q  156 gcttgttttt 165  Q
    ||||||||||    
T  8705961 gcttgttttt 8705952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 30964568 - 30964729
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    ||||||||||||| || ||| ||||||||||||| ||||||| | ||||| ||| |     |||||||||||||||||| ||||||||||| ||||||||    
T  30964568 tagctgcatgatcattcggttaggtgctcttcgaaatgtggccctgcttgggtggta----ctgggagttttattttgagggtgttctttgtgggtgagt 30964663  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttaggt 186  Q
    ||||| | |||||||||||| | ||||| ||||| |||| || |||| |   ||||||||||||||||    
T  30964664 agtgatgatgggcggtggtgaatatcgtatttacagtgcgtgatttttt--tggagtctgttttaggt 30964729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 20464786 - 20464869
Alignment:
Q  88 tttattttgatggtgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaag 171  Q
    |||||||||| |||||| |||||||||||||||||||| |||||||||||||| | ||||||||| | | |||||||| |||||    
T  20464786 tttattttgagggtgttatttgggggtgagtagtgacgatgggcggtggtggataccgtgtttacagggtttgtttttttgaag 20464869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 4305855 - 4305951
Alignment:
Q  22 ctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 119  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| || || |||| ||||||||||||||| | |||| |||||| |||||||||    
T  4305855 ctgcatgatccttcggtgaggtgctcttcga-atgtggctcaacttgggtatttgggtttgggagttttattttcagggtgatctttgtgggtgagta 4305951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 31050614 - 31050509
Alignment:
Q  20 agctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatgg-tgttctttgggggtgagt 118  Q
    ||||||||| || || ||| ||| ||| |||||| ||||||| |||||| ||||||  ||||||  |||||||||||| || ||||| ||||||||||||    
T  31050614 agctgcatgttcattcggttaggagcttttcgat-tgtggctaagcttgggtgttgaagtctggctgttttattttgaggggtgttccttgggggtgagt 31050516  T
Q  119 agtgacg 125  Q
    |||||||    
T  31050515 agtgacg 31050509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 35341258 - 35341141
Alignment:
Q  54 atgtggctcagcttgtgtgttggggtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttac 152  Q
    ||||||||||| ||| ||||||  || ||||||||||||||||| || |||||| ||||| |||||||||||| |||| ||| | ||| |  ||||||||    
T  35341258 atgtggctcagtttg-gtgttgaagtttgggagttttattttgaggggtgttctctgggg-tgagtagtgacgatgggtggttgcggatactgtgtttac 35341161  T
Q  153 ggtgcttgtttttgtgaagg 172  Q
     ||| |||||||||| ||||    
T  35341160 agtgtttgtttttgttaagg 35341141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 19311236 - 19311158
Alignment:
Q  103 ttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttt 181  Q
    ||||||||||||||| ||||||| |||  | || |||| ||||| ||||| ||||| ||||| |||||||| |||||||    
T  19311236 ttctttgggggtgagcagtgacggtggaggatgttggatatcgtttttacagtgctcgttttcgtgaaggaatctgttt 19311158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 39420906 - 39420825
Alignment:
Q  103 ttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagtctgttttag 184  Q
    ||||||||| |||||||||||||  ||| |||| |||| ||||| | ||||||| ||||| | ||| ||||||| |||||||    
T  39420906 ttctttgggtgtgagtagtgacgacgggtggtgttggatatcgtttatacggtggttgttctcgtgtaggagtcagttttag 39420825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 19673275 - 19673331
Alignment:
Q  70 gtgttggggtctgggagttttattttgatg-gtgttctttgggggtgagtagtgacg 125  Q
    |||||| || ||| |||||| ||||||| | ||||||||||||||||||||||||||    
T  19673275 gtgttgaggactgagagtttaattttgaggagtgttctttgggggtgagtagtgacg 19673331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 48098546 - 48098618
Alignment:
Q  103 ttctttgggggtgagtagtgacgttgggcggtggtggaaatcgtgtttacggtgcttgtttttgtgaaggagt 175  Q
    |||||||||||||||||||||||  |||  ||| |||| ||||| ||||| ||| | ||||||||||| ||||    
T  48098546 ttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagtggtcgtttttgtgaaagagt 48098618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 35726 - 35583
Alignment:
Q  19 tagctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagt 118  Q
    |||||||||||||| | ||| ||||||||||||| ||| ||||||||||| |||||||||| |||||||||| ||| ||  |||||||| |  |||||||    
T  35726 tagctgcatgatccatcggttaggtgctcttcgaaatgaggctcagcttgggtgttggggtgtgggagttttttttaga--gtgttcttagcaggtgagt 35629  T
Q  119 agtgacgttgggcggtggtggaaatcgtgtttacggtgcttgttttt 165  Q
     |||||| ||||| |||||||| |  |||||||| ||||||||||||    
T  35628 -gtgacgatgggcagtggtggatactgtgtttacagtgcttgttttt 35583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University