View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548-INSERTION-4 (Length: 552)
Name: NF1548-INSERTION-4
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548-INSERTION-4 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Complemental strand, 29240580 - 29240090
Alignment:
| Q |
7 |
atataaaaagtaaaacgagaaacaaaattcaacatcagattgtgtggacttacaaaaatacggcaattcatagtttgacagtaaacatttaaagattgaa |
106 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240580 |
atataaaaagcaaaacgagaaacggaattcaacatcagattgtgtggacatccaaaaatacggcaattcatagtttgacagtaaacatttaaagattgaa |
29240481 |
T |
|
| Q |
107 |
aactacagattgttagagaatagagaatataaagatatgtaccactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctg |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240480 |
aactacagattgttagagaatagagaatataaagatatgtatcactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctg |
29240381 |
T |
|
| Q |
207 |
atttgtgttgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacataatgcgaaa |
306 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
29240380 |
atttgtattgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacatagtgcaaaa |
29240281 |
T |
|
| Q |
307 |
gattattttccacaacttacctatattctgcttcagttggtagcatatcaatatatcatcctcaagctcctgaatgaattgtttataggacatcaaccct |
406 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240280 |
gattattttccacaacttacctatgttctgcttcagttggtagcat--------atcatcctcaagctcctgaatgaattgtttataggacatcaaccct |
29240189 |
T |
|
| Q |
407 |
tctctaaaagaggtcataattatactaatgttaacatgtagttccagaaagatcaattatcagacagaagtaaaataaagacagcttagaatcattaaa |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
29240188 |
tctctaaaagaggtcataattatactaatgttaacatgtagttccagaaagatcgattatcagaaagaagtaaaataaagacagcttagaatcattaaa |
29240090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Complemental strand, 16828116 - 16827626
Alignment:
| Q |
7 |
atataaaaagtaaaacgagaaacaaaattcaacatcagattgtgtggacttacaaaaatacggcaattcatagtttgacagtaaacatttaaagattgaa |
106 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| |
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| T |
16828116 |
atataaaaagtaaaacgagaaagggaaatcaacatcagattgtgtggacttacaaaaatatggcaattcatagttttacaggaaacatttaaagattgaa |
16828017 |
T |
|
| Q |
107 |
aactacagattgttagagaatagagaatataaagatatgtaccactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctg |
206 |
Q |
| |
|
||||||||| |||| | || |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
16828016 |
aactacagactgttttataacagagaatataaagatacgtaccactcctcatccttatgagcactgaaataagctcttttttgtgtagaaatatactctg |
16827917 |
T |
|
| Q |
207 |
atttgtgttgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacataatgcgaaa |
306 |
Q |
| |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
16827916 |
atttgtattcttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcaaactctcagacataatgcaaaa |
16827817 |
T |
|
| Q |
307 |
gattattttccacaacttacctatattctgcttcagttggtagcatatcaatatatcatcctcaagctcctgaatgaattgtttataggacatcaaccct |
406 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
16827816 |
gattattttccacaacttacctacgttctgcttcagttggtag--------tatatcatcctccagctcctgaatgaattgtttataggacatcaaccct |
16827725 |
T |
|
| Q |
407 |
tctctaaaagaggtcataattatactaatgttaacatgtagttccagaaagatcaattatcagacagaagtaaaataaagacagcttagaatcattaaa |
505 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16827724 |
tctctaaaacaggtcataattatactaatgttaacatgtagttccagaaagatcaattatcagacagaagtaaaataaagacagcttagaatcattaaa |
16827626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 846769 - 846822
Alignment:
| Q |
358 |
tatatcatcctcaagctcctgaatgaattgtttataggacatcaacccttctct |
411 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||||||||||| || ||||| |
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|
| T |
846769 |
tatatcatcttcaagctcctggatgaattgcttataggacatcaaaccctctct |
846822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 846564 - 846651
Alignment:
| Q |
146 |
taccactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctgatttgtgttgttgatacctagaaaaat |
233 |
Q |
| |
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|||||||| ||||||| || | |||||||||||||| |||||| |||| |||||||||||| |||| | ||| || |||||||||| |
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| T |
846564 |
taccactcagcatccttgtgggtattgaaataagctcgtttttgggtagtaatatactctgacttgtactcttggtatctagaaaaat |
846651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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