View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15480_high_1 (Length: 476)
Name: NF15480_high_1
Description: NF15480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15480_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 137 - 386
Target Start/End: Complemental strand, 31828429 - 31828180
Alignment:
| Q |
137 |
tgcatatgaatttgaagtaaaaccaattagcattattactacaaaacaaaccttgcttttcttcaagttatcatctctcattgttgatacagcttcatat |
236 |
Q |
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| T |
31828429 |
tgcatatgaatttgaagtaaaaccaattagcattattactacaaaacaaaccttgcttttcttcaagttatcatctctcattgttgatacagcttcatat |
31828330 |
T |
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| Q |
237 |
agattttgtttcttcaatctaatatagttttttgtgttgaaacaatgaagttggttgcttcaagaagggttaaagttgaaaaagcagagaatgagatgaa |
336 |
Q |
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| T |
31828329 |
agattttgtttcttcaatctaatatagttttttgtgttgaaacaatgaagttggttgcttcaagaagggttaaagttgaaaaagtagagaatgagatgaa |
31828230 |
T |
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| Q |
337 |
agtacaagtaataaaaacaacccttataatacgggttttttctgttgaat |
386 |
Q |
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| T |
31828229 |
agtacaagtaataaaaacaacccttataatacgggttttttctgttgaat |
31828180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31828550 - 31828476
Alignment:
| Q |
1 |
cgcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttcag |
75 |
Q |
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| T |
31828550 |
cgcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttcag |
31828476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 38124253 - 38124325
Alignment:
| Q |
2 |
gcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttca |
74 |
Q |
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| T |
38124253 |
gcttgaaagtcttgagatttggtcttgatattgaaccattttttgaccaatgtttttggccatgaaagcttca |
38124325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 38124421 - 38124465
Alignment:
| Q |
193 |
ttttcttcaagttatcatctctcattgttgatacagcttcatata |
237 |
Q |
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||||||||||||| ||||||||||||||||| | | ||||||||| |
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| T |
38124421 |
ttttcttcaagttttcatctctcattgttgagaaaacttcatata |
38124465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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